I am having an issue when viewing my results in AFNI where both the whereami and “go to atlas location” functions are unavailable. when I right click, they are there but they are unhighlighted and unable to be clicked on. My results, and anatomical underlay are in MNI space, but I’ve never had this be an issue before. My understanding is that regardless of your individual template space, the whereami gives you coordinates in talairach first, with MNI template coordinates below. I’m assuming my issue might have to do with unavailable templates in my AFNI directory, though I know I at least of an MNI template because I’ve loaded it. Has anyone encountered this issue, I assume it is probably a minor adjustment that is needed. Thank you!
As a follow up, as I have not used AFNI for a while, I seem to recall needing to making an adjustment to the x and/or y coordinate that whereami outputs in order to have the coordinate agree with the region listed. I can’t recall if this is due to radiological left/right flip, or another coordinate adjustment that has to be made,