I found that it is returns nothing if I using the command “whereami” to get anatomical label if my dataset is in MNI space.
The “Where am I” in the right-click recipe works very well.
However, I want to get a summary of the proportion of the overlap of the whole cluster with the brain atlas, not a single coordinate.
Thanks very much!
The below is an example command and output.
whereami -omask cluster1.nii
++ Input coordinates orientation set by default rules to LPI
++ In ordered mode …
++ Have 2 unique values of:
++ Skipping unique value of 0
++ Processing unique value of 1
++ 781 voxels in ROI
++ 2631 voxels in atlas-resampled mask
Intersection of ROI (valued 1) with atlas MNI_VmPFC (sb0):
0.0 % of cluster accounted for.