SUMA break when open Object Controller the second time on Mac Mojave

[EXP.2086]

Hi,

I found SUMA break when open Object Controller(OC) > close OC > open OC on my Mac Mojave.

The log in terminal:

@Terminal log

suma -vol T1.nii -spec y15_both.spec

vvvvvvvvvvvvvvvvvvvvvvvvvvvvSurface #1/14(Local Domain Parent), loading …

vvvvvvvvvvvvvvvvvvvvvvvvvvvvSurface #8/14(Local Domain Parent), loading …

vvvvvvvvvvvvvvvvvvvvvvvvvvvvSurface #2/14 (mappable via Local Domain Parent), loading …

vvvvvvvvvvvvvvvvvvvvvvvvvvvvSurface #3/14 (mappable via Local Domain Parent), loading …

vvvvvvvvvvvvvvvvvvvvvvvvvvvvSurface #4/14 (mappable via Local Domain Parent), loading …

vvvvvvvvvvvvvvvvvvvvvvvvvvvvSurface #5/14 (mappable via Local Domain Parent), loading …

vvvvvvvvvvvvvvvvvvvvvvvvvvvvSurface #6/14 (mappable via Local Domain Parent), loading …

vvvvvvvvvvvvvvvvvvvvvvvvvvvvSurface #7/14 (mappable via Local Domain Parent), loading …

vvvvvvvvvvvvvvvvvvvvvvvvvvvvSurface #9/14 (mappable via Local Domain Parent), loading …

vvvvvvvvvvvvvvvvvvvvvvvvvvvvSurface #10/14 (mappable via Local Domain Parent), loading …

vvvvvvvvvvvvvvvvvvvvvvvvvvvvSurface #11/14 (mappable via Local Domain Parent), loading …

vvvvvvvvvvvvvvvvvvvvvvvvvvvvSurface #12/14 (mappable via Local Domain Parent), loading …

vvvvvvvvvvvvvvvvvvvvvvvvvvvvSurface #13/14 (mappable via Local Domain Parent), loading …

vvvvvvvvvvvvvvvvvvvvvvvvvvvvSurface #14/14 (mappable via Local Domain Parent), loading …
SUMA_Engine: Starting to listen …
++ Notice SUMA_XtWarn_handler (SUMA_display.c:4114 @17:21:58):
X11 Warning 1:Cannot find callback list in XtAddCallback
Have 1 X11 warnings so far, see Help–>Message Log if curious.
This notice is shown once for each additional 10 warnings.

xp_import_surface: assertion failed: s == NULL
error: xp_import_surface returned: 2
xp_destroy_surface: assertion failed: s != NULL
xp_destroy_surface error: 3
oo Warning SUMA_XErrHandler (SUMA_display.c:4147):
Intercepted X11 error: 0
Will attempt to proceed but trouble might ensue.
++ Notice SUMA_XErrHandler (SUMA_display.c:4148 @17:22:03):
Trace At Xerr
SUMA_XErrHandler
SUMA_glXMakeCurrent
SUMA_cmap_wid_graphicsInit
SUMA_BringUpSurfContTLS
SUMA_viewSurfaceCont
SUMA_cb_viewSurfaceCont
suma
Bottom of Debug Stack
– Error SUMA_glXMakeCurrent (SUMA_display.c:341):
Failed in glXMakeCurrent.

SUMA_glXMakeCurrent (via SUMA_GL_ERRS): Looking for OpenGL errors …
SUMA_glXMakeCurrent: No errors found.
– Error SUMA_glXMakeCurrent (SUMA_display.c:343):
Called from SUMA_glXMakeCurrent
SUMA_glXMakeCurrent
SUMA_cmap_wid_graphicsInit
SUMA_BringUpSurfContTLS
SUMA_viewSurfaceCont
SUMA_cb_viewSurfaceCont
suma
Bottom of Debug Stack
Error SUMA_cmap_wid_graphicsInit: Failed in SUMA_glXMakeCurrent.
Continuing …
SUMA_cmap_wid_graphicsInit (via SUMA_GL_ERRS): Looking for OpenGL errors …
SUMA_cmap_wid_graphicsInit: No errors found.
xp_import_surface: assertion failed: s == NULL
error: xp_import_surface returned: 2
xp_destroy_surface: assertion failed: s != NULL
xp_destroy_surface error: 3
oo Warning SUMA_XErrHandler (SUMA_display.c:4147):
Intercepted X11 error: 0
Will attempt to proceed but trouble might ensue.
++ Notice SUMA_XErrHandler (SUMA_display.c:4148 @17:22:03):
Trace At Xerr
SUMA_XErrHandler
SUMA_glXMakeCurrent
SUMA_cmap_wid_handleRedisplay
SUMA_InitializeColPlaneShell_SO
SUMA_viewSurfaceCont
SUMA_cb_viewSurfaceCont
suma
Bottom of Debug Stack
– Error SUMA_glXMakeCurrent (SUMA_display.c:341):
Failed in glXMakeCurrent.

SUMA_glXMakeCurrent (via SUMA_GL_ERRS): Looking for OpenGL errors …
SUMA_glXMakeCurrent: No errors found.
– Error SUMA_glXMakeCurrent (SUMA_display.c:343):
Called from SUMA_glXMakeCurrent
SUMA_glXMakeCurrent
SUMA_cmap_wid_handleRedisplay
SUMA_InitializeColPlaneShell_SO
SUMA_viewSurfaceCont
SUMA_cb_viewSurfaceCont
suma
Bottom of Debug Stack
– Error SUMA_cmap_wid_handleRedisplay (SUMA_xColBar.c:381):
Failed in SUMA_glXMakeCurrent.
Continuing …

Fatal Signal 11 (SIGSEGV) received
SUMA_cmap_wid_display
SUMA_cmap_wid_handleRedisplay
SUMA_InitializeColPlaneShell_SO
SUMA_viewSurfaceCont
SUMA_cb_viewSurfaceCont
suma
Bottom of Debug Stack
** AFNI version = AFNI_19.2.05 Compile date = Jul 25 2019
** [[Precompiled binary macos_10.12_local: Jul 25 2019]]
** Program Death **
** If you report this crash to the AFNI message board,
** please copy the error messages EXACTLY, and give
** the command line you used to run the program, and
** any other information needed to repeat the problem.
** You may later be asked to upload data to help debug.
** Crash log is appended to file /Users/z/.afni.crashlog

The log in .afni.crashlog file:

@Crash log

------ CRASH LOG ------------------------------**
Fatal Signal 11 (SIGSEGV) received
… recent internal history …
--------SUMA_FindNgrAttributeElement [8]: EXIT} (file=suma_datasets.c line=1279) to SUMA_GetDatasetDimensions {14078 ms}
-------SUMA_GetDatasetDimensions [7]: EXIT} (file=suma_datasets.c line=1350) to SUMA_is_Label_dset {14078 ms}
+++++++SUMA_is_AllConsistentColType_dset [7]: {ENTRY (file=suma_datasets.c line=12341) from SUMA_is_Label_dset {14078 ms}
++++++++SUMA_TypeOfDsetColNumb [8]: {ENTRY (file=suma_datasets.c line=10066) from SUMA_is_AllConsistentColType_dset {14078 ms}
+++++++++SUMA_FindDsetAttributeElement [9]: {ENTRY (file=suma_datasets.c line=1214) from SUMA_TypeOfDsetColNumb {14078 ms}
---------SUMA_FindDsetAttributeElement [9]: EXIT} (file=suma_datasets.c line=1220) to SUMA_TypeOfDsetColNumb {14078 ms}
+++++++++SUMA_FindNgrAttributeElement [9]: {ENTRY (file=suma_datasets.c line=1231) from SUMA_TypeOfDsetColNumb {14078 ms}
---------SUMA_FindNgrAttributeElement [9]: EXIT} (file=suma_datasets.c line=1260) to SUMA_TypeOfDsetColNumb {14078 ms}
+++++++++SUMA_Get_Sub_String [9]: {ENTRY (file=suma_string_manip.c line=857) from SUMA_TypeOfDsetColNumb {14078 ms}
++++++++++SUMA_NI_get_ith_string [10]: {ENTRY (file=suma_string_manip.c line=487) from SUMA_Get_Sub_String {14078 ms}
----------SUMA_NI_get_ith_string [10]: EXIT} (file=suma_string_manip.c line=526) to SUMA_Get_Sub_String {14078 ms}
---------SUMA_Get_Sub_String [9]: EXIT} (file=suma_string_manip.c line=874) to SUMA_TypeOfDsetColNumb {14078 ms}
+++++++++SUMA_Col_Type [9]: {ENTRY (file=suma_datasets.c line=5081) from SUMA_TypeOfDsetColNumb {14078 ms}
---------SUMA_Col_Type [9]: EXIT} (file=suma_datasets.c line=5112) to SUMA_TypeOfDsetColNumb {14078 ms}
--------SUMA_TypeOfDsetColNumb [8]: EXIT} (file=suma_datasets.c line=10088) to SUMA_is_AllConsistentColType_dset {14078 ms}
-------SUMA_is_AllConsistentColType_dset [7]: EXIT} (file=suma_datasets.c line=12350) to SUMA_is_Label_dset {14078 ms}
------SUMA_is_Label_dset [6]: EXIT} (file=suma_datasets.c line=12440) to SUMA_InitializeColPlaneShell_SO {14078 ms}
++++++SUMA_cmap_wid_handleRedisplay [6]: {ENTRY (file=SUMA_xColBar.c line=363) from SUMA_InitializeColPlaneShell_SO {14078 ms}
+++++++SUMA_glXMakeCurrent [7]: {ENTRY (file=SUMA_display.c line=314) from SUMA_cmap_wid_handleRedisplay {14078 ms}
++++++++SUMA_XErrHandler [8]: {ENTRY (file=SUMA_display.c line=4143) from SUMA_glXMakeCurrent {14096 ms}
--------SUMA_XErrHandler [8]: EXIT} (file=SUMA_display.c line=4150) to SUMA_glXMakeCurrent {14096 ms}
-------SUMA_glXMakeCurrent [7]: EXIT} (file=SUMA_display.c line=344) to SUMA_cmap_wid_handleRedisplay {14096 ms}
+++++++SUMA_cmap_wid_display [7]: {ENTRY (file=SUMA_xColBar.c line=258) from SUMA_cmap_wid_handleRedisplay {14096 ms}
++++++++SUMA_build_rotmatrix [8]: {ENTRY (file=SUMA_trackball.c line=268) from SUMA_cmap_wid_display {14096 ms}
--------SUMA_build_rotmatrix [8]: EXIT} (file=SUMA_trackball.c line=289) to SUMA_cmap_wid_display {14096 ms}
++++++++SUMA_CmapOfPlane [8]: {ENTRY (file=SUMA_Color.c line=2285) from SUMA_cmap_wid_display {14096 ms}
+++++++++SUMA_Find_ColorMap [9]: {ENTRY (file=SUMA_Color.c line=1656) from SUMA_CmapOfPlane {14096 ms}
---------SUMA_Find_ColorMap [9]: EXIT} (file=SUMA_Color.c line=1677) to SUMA_CmapOfPlane {14096 ms}
--------SUMA_CmapOfPlane [8]: EXIT} (file=SUMA_Color.c line=2309) to SUMA_cmap_wid_display {14096 ms}
++++++++SUMA_DrawCmap [8]: {ENTRY (file=SUMA_xColBar.c line=190) from SUMA_cmap_wid_display {14096 ms}
--------SUMA_DrawCmap [8]: EXIT} (file=SUMA_xColBar.c line=242) to SUMA_cmap_wid_display {14096 ms}
…
SUMA_cmap_wid_display
SUMA_cmap_wid_handleRedisplay
SUMA_InitializeColPlaneShell_SO
SUMA_viewSurfaceCont
SUMA_cb_viewSurfaceCont
suma
** AFNI compile date = Jul 25 2019
** [[Precompiled binary macos_10.12_local: Jul 25 2019]]
** Program Crash **

Thank you,
2086

[dglen]

Unfortunately, this is a known issue introduced with the Mac OS several versions ago. The only workaround we found is to keep the controller open.

[EXP.2086]

Yeah, I do not want to restart Object Controller too, but sometimes it looks like this when first open by DriveSuma: