OK, cool. And note you can run clusterize within @chauffeur_afni
, too. I think you are set here already, but just so you know about the functionality for future cases:
-clusterize "-opt0 v0 -opt1 v1 ..."
:input a set of options "-opt0 v0 -opt1 v1 ..." for
3dClusterize to use internally, so that the
overlay dataset is clusterized. Can be combined
with Alpha+Boxed. See the "Clusterize
capabilities" description in the NOTES below for
what options go where when clusterizing. Examples
are also included below.
-clusterize_wami CW :if using '-clusterize ..', then this option can be used
to run AFNI's whereami program on the results. The user
provides the name of an allowed atlas for reference
(see the top of whereami's help), and a text file
reporting the relative overlap of each ROI will be
produced in the outputs.
--pt