AFNI version info (afni -ver
):
Precompiled binary linux_ubuntu_16_64: Nov 7 2023 (Version AFNI_23.3.07 'Septimius Severus')
I like to save clusters as a mask following Rpt GUI.
I can save all SaveMsk (it combine all to a single mask), but I need each one separately.
This is the error I get for *Plot* and *Save*( (*Jump* and *Flash* works fine.):
**can't get data!!!**
**Need Aux Dataset!**
My data is save on storwis (remote disk mounted as a CIFS(Samba) file system) I run and save results_dir on my local computer.
The overlay is the output from (many subjects, I added here only one for an example)
>
> #!/bin/tcsh -xef
>
> # ---------------------- set process variables ----------------------
>
> set mask_dset = /storwis/mask.epi_anat.union.nii.gz
>
> set dirA = /storwis/
>
> # specify and possibly create results directory
>
> set results_dir = test.results
> if ( ! -d $results_dir ) mkdir $results_dir
>
> # ------------------------- process the data -------------------------
>
> 3dMEMA -prefix $results_dir/ER \
> -mask $mask_dset \
> -missing_data 0 \
> -set cong.N45 \
> sub01 \
> "$dirA/sub01.stats.REML+tlrc[XXX#0_Coef]" \
> "$dirA/sub01.stats.REML+tlrc[XXX#0_Tstat]" \
> ```