Hi AFNI squad,
I was wondering if there was a way to run a new regression in the same results directory without having to re-do the preprocessing, while including the regression and post-regression steps (REMLfit, blur estimation, APQC, etc). I know the -write_3dd_script afni_proc command can create a new 3dDeconvolve script, but not the rest of the steps I listed. Thanks for your help in advance!
There isn’t a mechanism for generating a new APQC HTML from that kind of rerun that generates a separate output in the results directory at present, unfortunately.
Note that at least the REMLfit step is easy after -write_3dd_script. Running that 3dDeconvolve command will generate a new 3dREMLfit script, even if using -x1D_stop.
I should have been more clear in my initial reply that I was specifically referring to generating a separate APQC for that new output. I have edited my reply now to be more precise. Rick has commented about the other aspects.
Okay, thanks Paul and Rick! I appreciate the response.