Hi, Pt
GSL isn’t installed on my computer.
Here is the result of afni system check:
afni_system_check.py -check_all
-------------------------------- general ---------------------------------
architecture: 64bit ELF
system: Linux
release: 4.8.0-58-generic
version: #63~16.04.1-Ubuntu SMP Mon Jun 26 18:08:51 UTC 2017
distribution: Ubuntu 16.04 xenial
number of CPUs: 8
apparent login shell: tcsh
shell RC file: .cshrc (exists)
--------------------- AFNI and related program tests ---------------------
which afni : /home/y/abin/afni
afni version : Precompiled binary linux_openmp_64: Mar 10 2017
: AFNI_17.0.15
AFNI_version.txt : AFNI_17.0.15, linux_openmp_64, Mar 10 2017
which python : /usr/bin/python
python version : 2.7.12
which R : /usr/bin/R
R version : R version 3.4.0 (2017-04-21) – “You Stupid Darkness”
which tcsh : /usr/bin/tcsh
instances of various programs found in PATH:
afni : 1 (/home/y/abin/afni)
R : 1 (/usr/bin/R)
python : 1 (/usr/bin/python2.7)
python2 : 1 (/usr/bin/python2.7)
python3 : 1 (/usr/bin/python3.5)
testing ability to start various programs…
afni : success
suma : success
3dSkullStrip : success
uber_subject.py : success
3dAllineate : success
3dRSFC : success
SurfMesh : success
checking for R packages…
rPkgsInstall -pkgs ALL -check : success
checking for $HOME files…
.afnirc : found
.sumarc : found
.afni/help/all_progs.COMP : found
------------------------------ python libs -------------------------------
++ module ‘PyQt4’ found at /usr/lib/python2.7/dist-packages/PyQt4
++ module loaded: PyQt4
-------------------------------- env vars --------------------------------
PATH = /home/y/bin:/home/y/.local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/home/y/abin
PYTHONPATH =
R_LIBS = /home/y/R
LD_LIBRARY_PATH =
DYLD_LIBRARY_PATH =
DYLD_FALLBACK_LIBRARY_PATH =
------------------------------ data checks -------------------------------
data dir : found AFNI_data6 under $HOME/CD
top history: 30 Dec 2016 [rickr]: applied updated FS reordering
data dir : found AFNI_demos under $HOME/CD
top history: … [pault]: remove rank from FATCAT_DEMO, FAT_MVM_DEMO
data dir : found suma_demo under $HOME/CD
top history: …/SUMA_data/Build_tmp on Wed Aug 20 10:04:23 EDT 2014
data dir : found afni_handouts under $HOME/CD
atlas : found TT_N27+tlrc under ./
------------------------------ OS specific -------------------------------
which apt-get : /usr/bin/apt-get
apt-get version : apt 1.2.20 (amd64)
have Ubuntu system: Ubuntu 16.04 xenial
========================= nothing to fix, yay! =========================
Best regards
Sue