I just pulled the most recent version of the AFNI source code, and compiled it for my El Capitan OS X machine.
Running:
make totality
was mostly uneventful, except I did not get any of the python scripts (in afni_src/python_scripts) copied over to the installation target directory. Is this something that should be done manually, or is there another build/install target that should be used for this?
Thanks!