Proc.py Error

AFNI Message Board
1

Dear AFNI experts,

I had the below error while running resting state proc py (example 11 using Freesurfer).

3dTproject -polort 3 -prefix rm.det_pcin_r01 -censor rm.censor.r01.1D -cenmode KILL -input pb02.subj.time1.r01.volreg+tlrc
++ 3dTproject: AFNI version=AFNI_18.2.15 (Aug 28 2018) [64-bit]
++ Authored by: Cox the Algebraic (Linear)
++ input time points = 176 ; censored = 176 ; remaining = 0
** FATAL ERROR: only 0 points left after censoring – cannot continue (need at least 9)
** Program compile date = Aug 28 2018

I am not sure what caused this error. Could you please let me know?

Thank you in advance for your help,
Jun

2

Hi Jun,

According to that, your entire time series was censored due to motion. That is a little peculiar.

If you have an enorm file in the results directory (try: ls enorm), would you please mail it to me?

Also, would you please post your afni_proc.py command, or mail that as well?

  • rick
3

Hi Rick,

Sorry for the belated update. My coworker suggested trying alignment of anatomical and epi images and rerun the proc py which worked. Thank you so much for your help.

Jun