Hello! I recently set up afni/suma on my Windows 10 machine using Ubuntu 20.04 and WSL. Both afni and suma are running successfully in Ubuntu.
However, when I try to call afni commands in MATLAB I get the following error:
'3dresample' is not recognized as an internal or external command, operable program or batch file.
I thought maybe the abin directory wasn’t adding successfully to MATLAB’s path, but running “path” in matlab shows that my abin directory is there. My abin directory contains the @3dresample file, so I’m lost as to why it isn’t running. Any advice on how to fix this?
Thanks for the help~
some extra notes that might be helpful:
- I tried using the original location of abin as created by the installation package and got the error, so I copied the entire abin directory to my home directory and tried adding this directory to the path instead. I still got the same error.
- I tried adding the following line to my ~/ .bashrc file:
- the code I’m using to add directories to the path in MATLAB is:
oldpath = path; path('C:\Users\kimbe\abin',oldpath)
I’ve also tried the following, but it doesn’t successfully add the directory to the path like I expected…
PATH = getenv('PATH'); setenv('PATH', [PATH ':\Users\kimbe\abin']