Pause and restart 3dMVM

AFNI Message Board
1

AFNI version info (afni -ver):

22.2.06

I am running AFNI on our super computer where I often run out of time (through a singularity container). It's annoying to have to completely restart 3dMVM half way through because it didn't finish in time. Is there any way to stop 3dMVM (running through a basic script), save the output and restart when logging back in?

Thanks

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2

Is there any way to stop 3dMVM (running through a basic script), save the output and restart when logging back in?

Unfortunately, this specific feature is not available at the moment. However, on your supercomputer, is there an option that would enable you to set a desired wall time, like in the example below?

sbatch --time=120:00:00 jobscript

Gang

3

Thanks for getting back.

4

Another option is to cut each of your input files into multiple chunks along Z-axis using 3dZcutup and run each chunk separately. In the end, clue them back together using 3dZcat.

Gang