Hi ptaylor,
Thank you for your reply!
Glad to hear about the @SSwarper update, I'll update my afni and use the latest sswarper2!
Here are some additions:
@SSwarperworks fine, anat to template alignment is good! But EPI to anat alignment isn't as good as anat to template.- About cost fucntions, my EPI tissue don't have enough contrast, so when I use lpc+ZZ, the EPI to anat alignment is bad.
- Thanks for the suggestion about resting-state preprocessing! I'd consider dropping the bandpass filtering on my data. And add demean to the -regress_apply_mot_types option.
- The EPI data with a voxel size of 3mm, all output data are voxels of 3mm size.
Supplementary images(take one subject as an example):
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initial EPI and T1w images
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ve2a and va2t images
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left-right flipping images
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EPI variance lines warning
Sincerely,
Yang



