new atlases (aal90, harvard oxford) in whereami

AFNI Message Board
1

Hi,

Is it possible to have atlases like aal90 and harvard oxford in the whereami command? I am using that to map my selection voxels to brain areas and it would be great if i could do it for these atlases as well.

Thanks.
Prateek Sasan

2

Take a look at look at this previous post for some thoughts on the AAL atlas (I’m not sure if the AAL-90 is the same)

https://afni.nimh.nih.gov/afni/community/board/read.php?1,155179,155182#msg-155182

You can convert other atlases similarly as the method posted there. I can make a labeled AFNI dataset for the Harvard-Oxford atlas if you would like to wait. The labeling needs a bit of scripting and some manual care.