Hello AFNI Experts,
I have done some initial preprocessing of resting state data in AFNI. Now I plan to do the rest of the denosing and 1st levels for the connectivity analysis in CONN.
I plan to use the motion regressors and censoring files that AFNI produced from my afni proc py script as first level covariates. I will importing the smoothed functional data (not the errts that would have motion regressed out already) and using conn to do the additional denoising steps.
I want to make sure I have I identified the appropriate 1D files, which I think would be:
a.) censor_combined 1D file (0s and 1s, indicating which images should be censored)
b.) motion_deriv 1D file
c.) motion_demean 1D
Are there any other files I should be importing from AFNI in order to properly regress out motion?