missing functions after installation of latest version

Installation Issues
1

Hello,
We have updated our AFNI installation in our Linux cluster with the latest version:

afni -version
Precompiled binary linux_openmp_64: Marz 5 2024 (Version AFNI_24.0.10 'Caracalla')

The installation was fine and afni_system_check.py didn't prompt any issue.
However, it turns out that some functions are missing, such as 3dSkullStrip, 3dSeg, 3dFWHM..., but not all of them.
First, we noticed that 3dSkullStrip was missing, and then check for all 3dS* functions with autocomplete and realized that 3dSeg was missing too by comparing with all 3dS functions in the all program help website. We also checked 3dF* and 3dFWHM is missing, but not the rest of 3dF* functions.

Any idea of the possible reason?

Thanks very much
Cesar

2

I noticed the same issue with several functions missing from the linux_openmp_64 installer for 24.0.10. This is the full list of functions that are present in the linux_ubuntu_16_64 install of 24.0.10, but not in the linux_openmp_64 24.0.10 install.

Only in linux_ubuntu_16_64: 3dBRAIN_VOYAGERtoAFNI
Only in linux_ubuntu_16_64: 3dCRUISEtoAFNI
Only in linux_ubuntu_16_64: 3dGenFeatureDist
Only in linux_ubuntu_16_64: 3dGenPriors
Only in linux_ubuntu_16_64: 3dHist
Only in linux_ubuntu_16_64: 3dinfill
Only in linux_ubuntu_16_64: 3dSeg
Only in linux_ubuntu_16_64: 3dSkullStrip
Only in linux_ubuntu_16_64: 3dSurf2Vol
Only in linux_ubuntu_16_64: 3dSurfMask
Only in linux_ubuntu_16_64: 3dVol2Surf
Only in linux_ubuntu_16_64: AnalyzeTrace
Only in linux_ubuntu_16_64: BrainSkin
Only in linux_ubuntu_16_64: CompareSurfaces
Only in linux_ubuntu_16_64: ConvertDset
Only in linux_ubuntu_16_64: ConvertSurface
Only in linux_ubuntu_16_64: ConvexHull
Only in linux_ubuntu_16_64: CreateIcosahedron
Only in linux_ubuntu_16_64: DriveSuma
Only in linux_ubuntu_16_64: FSread_annot
Only in linux_ubuntu_16_64: HalloSuma
Only in linux_ubuntu_16_64: inspec
Only in linux_ubuntu_16_64: InstaTract
Only in linux_ubuntu_16_64: IsoSurface
Only in linux_ubuntu_16_64: libSUMA.so
Only in linux_ubuntu_16_64: MakeColorMap
Only in linux_ubuntu_16_64: MapIcosahedron
Only in linux_ubuntu_16_64: niprobe
Only in linux_ubuntu_16_64: ParseName
Only in linux_ubuntu_16_64: prompt_popup
Only in linux_ubuntu_16_64: prompt_user
Only in linux_ubuntu_16_64: quickspec
Only in linux_ubuntu_16_64: ROI2dataset
Only in linux_ubuntu_16_64: ROIgrow
Only in linux_ubuntu_16_64: SampBias
Only in linux_ubuntu_16_64: ScaleToMap
Only in linux_ubuntu_16_64: SpharmDeco
Only in linux_ubuntu_16_64: SpharmReco
Only in linux_ubuntu_16_64: suma
Only in linux_ubuntu_16_64: Surf2VolCoord
Only in linux_ubuntu_16_64: SurfaceMetrics
Only in linux_ubuntu_16_64: SurfClust
Only in linux_ubuntu_16_64: SurfDist
Only in linux_ubuntu_16_64: SurfDsetInfo
Only in linux_ubuntu_16_64: SurfExtrema
Only in linux_ubuntu_16_64: SurfFWHM
Only in linux_ubuntu_16_64: SurfInfo
Only in linux_ubuntu_16_64: SurfLocalstat
Only in linux_ubuntu_16_64: SurfMeasures
Only in linux_ubuntu_16_64: SurfMesh
Only in linux_ubuntu_16_64: SurfPatch
Only in linux_ubuntu_16_64: SurfQual
Only in linux_ubuntu_16_64: SurfRetinoMap
Only in linux_ubuntu_16_64: SurfSmooth
Only in linux_ubuntu_16_64: SurfToSurf

3

Thanks a lot for mentioning this, I had not noticed.

Note that 3dFWHM is no longer distributed, in favor of 3dFWHMx.

More news later...

  • rick
4

Thank you Rick and jbartolitti. Looking forward to the new version.

5

The build fixing this is done and is available on the server. Please feel free to update your binaries.

Thanks again for letting us know!

  • rick
6

thank you!!