macOS Monterey 12.1

Installation Issues
1

I tried to install to my macOS Monterey 12.1 (M1).
I have followed the instructions for NIMH users in this link: https://afni.nimh.nih.gov/pub/dist/doc/htmldoc/background_install/install_instructs/steps_macOS_12_Silicon.html

The evaluation was like this:

  • just be aware: login shell 'zsh', but our code examples use 'tcsh'
  • missing program: afni
  • missing program: R
  • failure under initial "AFNI and related program tests"
  • AFNI programs show FAILURE
  • missing program: Xvfb
  • missing R packages (see rPkgsInstall)
  • need maptplotlib version 2.2+ for APQC
  • please run: cp /Users/macbook/abin/AFNI.afnirc ~/.afnirc
  • please run: "suma -update_env" for .sumarc
  • please run: apsearch -update_all_afni_help
  • dot file test : want 2 modifications across 3 files:
  • insufficient data for AFNI bootcamp
    (see "Prepare for Bootcamp" on install pages)
  • possibly missing atlases
  • strange XQuartz version:

Is just enough to install or do I have to do another like download something ?
The one that is for non-NIMH users requires sudo password, but I do not know what it is. Do I need to download sudo?
I need assistance on exactly what to do with a stepwise approach. Thank you

2

In order to run the 'admin' script (using sudo), the person needs admin rights.

Note that if an admin does this (and not you), then the admin will own the homebrew trees, and they will be the one who needs to update homebrew packages afterwards.

  • rick
1 Like