I would be truly grateful for your prompt guidance. I see that others (@AnnaX , @elif , @menonsn ) have posted to this message board about similar issues with installing on Apple Silicon M1.
I’m running on macOS Monterey 12.7.2.
python version 3.9.15 under anaconda3
I do have administrative privileges.
I am not enrolled in an AFNI bootcamp.
When I completed the last step (E.), opened a new terminal and ran:
afni_system_check.py -check_all
I got a long output terminating in this:
setenv: Too many arguments.
Now when I run this again ( afni_system_check.py -check_all ), I get "command not found."
Running this produces no file: afni_system_check.py -check_all > out.ASC.txt
I’d be grateful for help. Please let me know what to try or if you want to see my hist_commands.txt or hist_messages.txt.
We resolved that via zoom in December, but I no longer recall what was necessary. But the main problem was probably conda interference with installing dependencies and then compiling.
Would you provide more details about what the problem is in your case? It might help for you to start with showing the output of:
~/abin/afni_system_check.py -check_all
What part of the install steps did you get through?
That’s right, Rick. As I remember it, there was interference from my Conda installation. I believe that we had to remove Conda activation from my .bashrc file.
Just to follow up, when compiling the AFNI package, it is generally a good idea not to be in any conda environment (including base). That can cause the compiler to look for libraries in the wrong place. But once the compilation is finished it is generally okay to be in a conda environment when actually running the AFNI programs.
That is to say, when building/updating AFNI: deactivate, build, activate again.
rick
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