Hi everyone and thank you for maintaining this wonderful community.
I am trying to compare the same 5 subjects scanned on two different 3T scanners with similar resting state fMRI sequence.
Reading the excellent paper of Gang et al. (https://doi.org/10.1002/hbm.23909 ) I decided to use 3dLME with the option -ICCb (below is part of my script) to compare ReHo maps across scanners:
3dLME -prefix reml1 -jobs 12
Subj Scanner InputFile
This runs correctly and when I open in AfNI the brick, I select Subject as 0Lay and Thr I choose Scanner, then I move the slider bar up to .5 and look at the results. Does this approach sound pertinent to you?
thank you a lot