AFNI version info (afni -ver
): AFNI_20.2.03
I have a very simple experiment that was conducted for two groups: patients vs. control, PRE and POST a particular treatment. I already ran analysis on individual subjects to get individual activation maps; now I am simply trying to capture the Group by Time interaction effect. My patient group has N=39, my control group has n=25. I tried 3dMVM and 3dLMEr, but for both AFNI kept giving me the following error message:
"Error in if (len%%wd != 0) errex.AFNI(paste("The content under -dataTable is not rectangular!","
Below are my code and data table, how can I fix it?
FYI the datatable was in a csv file, with only 4 columns, not sure how can it possibly be "not rectangular"
3dMVM -prefix stat_MVM -jobs 4 -bsVars "GROUP" -wsVars "TIME" -mask TT_mask+tlrc -SS_type 2 -num_glt 14 -gltLabel 1 preVSpost -gltCode 1 'TIME : 1*TIME : 1*POST -1*PRE' -gltLabel 2 MDvsCL -gltCode 2 'condition : 1*GROUP : 1*patients -1*control' -gltLabel 3 Interaction -gltCode 3 'GROUP: 1*patients -1*control TIME : 1*POST -1*PRE' -dataTable datatable.csv
3dLMEr -prefix stat_LME -mask TT_mask+tlrc -model 'groupXtime' -SS_type 3 -gltCode eff_time 'TIME: 1*POST-1*PRE' -gltCode eff_group 'GROUP: 1*patients -1*control' -gltCode eff_Interaction 'GROUP : 1*patients -1*control TIME : 1*POST-1*PRE' -dataTable datatable.csv
below is my datatable:
(ignore the SV###, those are original subject numbers that are not exactly in the right order, the final subject number is under "Subj")
Subj GROUP TIME file
s1 patient POST post/SV005/activation+tlrc
s2 patient POST post/SV011/activation+tlrc
s3 patient POST post/SV013/activation+tlrc
s4 patient POST post/SV021/activation+tlrc
s5 patient POST post/SV022/activation+tlrc
s6 patient POST post/SV029/activation+tlrc
s7 patient POST post/SV031/activation+tlrc
s8 patient POST post/SV032/activation+tlrc
s9 patient POST post/SV038/activation+tlrc
s10 patient POST post/SV039/activation+tlrc
s11 patient POST post/SV041/activation+tlrc
s12 patient POST post/SV042/activation+tlrc
s13 patient POST post/SV045/activation+tlrc
s14 patient POST post/SV046/activation+tlrc
s15 patient POST post/SV047/activation+tlrc
s16 patient POST post/SV049/activation+tlrc
s17 patient POST post/SV054/activation+tlrc
s18 patient POST post/SV065/activation+tlrc
s19 patient POST post/SV069/activation+tlrc
s20 patient POST post/SV071/activation+tlrc
s21 patient POST post/SV074/activation+tlrc
s22 patient POST post/SV076/activation+tlrc
s23 patient POST post/SV081/activation+tlrc
s24 patient POST post/SV083/activation+tlrc
s25 patient POST post/SV085/activation+tlrc
s26 patient POST post/SV087/activation+tlrc
s27 patient POST post/SV096/activation+tlrc
s28 patient POST post/SV098/activation+tlrc
s29 patient POST post/SV099/activation+tlrc
s30 patient POST post/SV107/activation+tlrc
s31 patient POST post/SV112/activation+tlrc
s32 patient POST post/SV113/activation+tlrc
s33 patient POST post/SV114/activation+tlrc
s34 patient POST post/SV115/activation+tlrc
s35 patient POST post/SV119/activation+tlrc
s36 patient POST post/SV121/activation+tlrc
s37 patient POST post/SV136/activation+tlrc
s38 patient POST post/SV137/activation+tlrc
s39 patient POST post/SV140/activation+tlrc
s1 patient PRE pre/SV005/activation+tlrc
s2 patient PRE pre/SV011/activation+tlrc
s3 patient PRE pre/SV013/activation+tlrc
s4 patient PRE pre/SV021/activation+tlrc
s5 patient PRE pre/SV022/activation+tlrc
s6 patient PRE pre/SV029/activation+tlrc
s7 patient PRE pre/SV031/activation+tlrc
s8 patient PRE pre/SV032/activation+tlrc
s9 patient PRE pre/SV038/activation+tlrc
s10 patient PRE pre/SV039/activation+tlrc
s11 patient PRE pre/SV041/activation+tlrc
s12 patient PRE pre/SV042/activation+tlrc
s13 patient PRE pre/SV045/activation+tlrc
s14 patient PRE pre/SV046/activation+tlrc
s15 patient PRE pre/SV047/activation+tlrc
s16 patient PRE pre/SV049/activation+tlrc
s17 patient PRE pre/SV054/activation+tlrc
s18 patient PRE pre/SV065/activation+tlrc
s19 patient PRE pre/SV069/activation+tlrc
s20 patient PRE pre/SV071/activation+tlrc
s21 patient PRE pre/SV074/activation+tlrc
s22 patient PRE pre/SV076/activation+tlrc
s23 patient PRE pre/SV081/activation+tlrc
s24 patient PRE pre/SV083/activation+tlrc
s25 patient PRE pre/SV085/activation+tlrc
s26 patient PRE pre/SV087/activation+tlrc
s27 patient PRE pre/SV096/activation+tlrc
s28 patient PRE pre/SV098/activation+tlrc
s29 patient PRE pre/SV099/activation+tlrc
s30 patient PRE pre/SV107/activation+tlrc
s31 patient PRE pre/SV112/activation+tlrc
s32 patient PRE pre/SV113/activation+tlrc
s33 patient PRE pre/SV114/activation+tlrc
s34 patient PRE pre/SV115/activation+tlrc
s35 patient PRE pre/SV119/activation+tlrc
s36 patient PRE pre/SV121/activation+tlrc
s37 patient PRE pre/SV136/activation+tlrc
s38 patient PRE pre/SV137/activation+tlrc
s39 patient PRE pre/SV140/activation+tlrc
s40 control POST post/SV002/activation+tlrc
s41 control POST post/SV008/activation+tlrc
s42 control POST post/SV009/activation+tlrc
s43 control POST post/SV014/activation+tlrc
s44 control POST post/SV024/activation+tlrc
s45 control POST post/SV025/activation+tlrc
s46 control POST post/SV027/activation+tlrc
s47 control POST post/SV030/activation+tlrc
s48 control POST post/SV037/activation+tlrc
s49 control POST post/SV043/activation+tlrc
s50 control POST post/SV053/activation+tlrc
s51 control POST post/SV056/activation+tlrc
s52 control POST post/SV057/activation+tlrc
s53 control POST post/SV061/activation+tlrc
s54 control POST post/SV063/activation+tlrc
s55 control POST post/SV068/activation+tlrc
s56 control POST post/SV086/activation+tlrc
s57 control POST post/SV090/activation+tlrc
s58 control POST post/SV094/activation+tlrc
s59 control POST post/SV097/activation+tlrc
s60 control POST post/SV103/activation+tlrc
s61 control POST post/SV111/activation+tlrc
s62 control POST post/SV120/activation+tlrc
s63 control POST post/SV124/activation+tlrc
s64 control POST post/SV127/activation+tlrc
s40 control PRE pre/SV002/activation+tlrc
s41 control PRE pre/SV008/activation+tlrc
s42 control PRE pre/SV009/activation+tlrc
s43 control PRE pre/SV014/activation+tlrc
s44 control PRE pre/SV024/activation+tlrc
s45 control PRE pre/SV025/activation+tlrc
s46 control PRE pre/SV027/activation+tlrc
s47 control PRE pre/SV030/activation+tlrc
s48 control PRE pre/SV037/activation+tlrc
s49 control PRE pre/SV043/activation+tlrc
s50 control PRE pre/SV053/activation+tlrc
s51 control PRE pre/SV056/activation+tlrc
s52 control PRE pre/SV057/activation+tlrc
s53 control PRE pre/SV061/activation+tlrc
s54 control PRE pre/SV063/activation+tlrc
s55 control PRE pre/SV068/activation+tlrc
s56 control PRE pre/SV086/activation+tlrc
s57 control PRE pre/SV090/activation+tlrc
s58 control PRE pre/SV094/activation+tlrc
s59 control PRE pre/SV097/activation+tlrc
s60 control PRE pre/SV103/activation+tlrc
s61 control PRE pre/SV111/activation+tlrc
s62 control PRE pre/SV120/activation+tlrc
s63 control PRE pre/SV124/activation+tlrc
s64 control PRE pre/SV127/activation+tlrc