I intend to analyze the data in AFNI at the individual level, after preprocessed by fmriprep:
fmriprep-docker /media/work21/BIDS/Nifti /media/work21/ BIDS_T1 participant --participant-label 1 --output-spaces T1w --skull-strip-t1w force --fs-license-file /home/Downloads/freesurfer/license.txt --fs-no-reconall --n_cpus 32
However, after preprocessing, I got anat in original format (sub1_T1+orig.HEAD) while EPIs in tlrc format after transformed by 3dcopy in AFNI (sub-1_task-checker_acq-TR156_space-T1w_desc-preproc_bold+tlrc.HEAD). As a result, after GLM analysis, I cannot use T1 as underlay, when applying the stats in tlrc format as overlay. Is there a command that might work for me?
Thanks for the hel