Hello afni experts, I am pretty new to afni and Unix system. I am trying to install afni on a WSL Ubuntu 20.04 system but the R installation is quite annoying. I tried to fix this problem as ohter post said on the forum but still not work.. So I am here to seek for some help. Thanks a lot!
peng@PENG-MSI:~$ Rscript -e "install.packages(c('Rcpp','brms'), dependencies = TRUE, INSTALL_opts = '--no-lock')"
Installing packages into ‘/home/peng/R’
(as ‘lib’ is unspecified)
Warning: dependency ‘cmdstanr’ is not available
also installing the dependencies ‘gsl’, ‘broom’, ‘tidyr’, ‘rtdists’, ‘mice’, ‘spdep’
trying URL 'https://cloud.r-project.org/src/contrib/gsl_2.1-8.tar.gz'
Content type 'application/x-gzip' length 217997 bytes (212 KB)
==================================================
downloaded 212 KB
trying URL 'https://cloud.r-project.org/src/contrib/broom_1.0.7.tar.gz'
Content type 'application/x-gzip' length 644384 bytes (629 KB)
==================================================
downloaded 629 KB
trying URL 'https://cloud.r-project.org/src/contrib/tidyr_1.3.1.tar.gz'
Content type 'application/x-gzip' length 809058 bytes (790 KB)
==================================================
downloaded 790 KB
trying URL 'https://cloud.r-project.org/src/contrib/rtdists_0.11-5.tar.gz'
Content type 'application/x-gzip' length 532264 bytes (519 KB)
==================================================
downloaded 519 KB
trying URL 'https://cloud.r-project.org/src/contrib/mice_3.16.0.tar.gz'
Content type 'application/x-gzip' length 600498 bytes (586 KB)
==================================================
downloaded 586 KB
trying URL 'https://cloud.r-project.org/src/contrib/spdep_1.3-6.tar.gz'
Content type 'application/x-gzip' length 4658588 bytes (4.4 MB)
==================================================
downloaded 4.4 MB
trying URL 'https://cloud.r-project.org/src/contrib/Rcpp_1.0.13.tar.gz'
Content type 'application/x-gzip' length 3435344 bytes (3.3 MB)
==================================================
downloaded 3.3 MB
trying URL 'https://cloud.r-project.org/src/contrib/brms_2.22.0.tar.gz'
Content type 'application/x-gzip' length 4965722 bytes (4.7 MB)
==================================================
downloaded 4.7 MB
* installing *source* package ‘gsl’ ...
** package ‘gsl’ successfully unpacked and MD5 sums checked
staged installation is only possible with locking
** using non-staged installation
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking for gsl-config... no
configure: error: gsl-config not found, is GSL installed?
ERROR: configuration failed for package ‘gsl’
* removing ‘/home/peng/R/gsl’
* installing *source* package ‘tidyr’ ...
** package ‘tidyr’ successfully unpacked and MD5 sums checked
staged installation is only possible with locking
** using non-staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0’
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/home/peng/R/cpp11/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-thBIeW/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c cpp11.cpp -o cpp11.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/home/peng/R/cpp11/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-thBIeW/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c melt.cpp -o melt.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/home/peng/R/cpp11/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-thBIeW/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c simplifyPieces.cpp -o simplifyPieces.o
g++ -std=gnu++17 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o tidyr.so cpp11.o melt.o simplifyPieces.o -L/usr/lib/R/lib -lR
installing to /home/peng/R/tidyr/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Warning: S3 methods ‘as_mapper.character’, ‘as_mapper.default’, ‘as_mapper.list’, ‘as_mapper.numeric’, ‘print.purrr_function_compose’, ‘print.purrr_function_partial’, ‘print.purrr_rate_backoff’, ‘print.purrr_rate_delay’, ‘rate_sleep.purrr_rate_backoff’, ‘rate_sleep.purrr_rate_delay’ were declared in NAMESPACE but not found
Error in library.dynam(lib, package, package.lib) :
shared object ‘purrr.so’ not found
Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace -> library.dynam
Execution halted
ERROR: lazy loading failed for package ‘tidyr’
* removing ‘/home/peng/R/tidyr’
* installing *source* package ‘spdep’ ...
** package ‘spdep’ successfully unpacked and MD5 sums checked
staged installation is only possible with locking
** using non-staged installation
** libs
using C compiler: ‘gcc (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0’
gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-thBIeW/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c card.c -o card.o
gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-thBIeW/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dfs_ncomp.c -o dfs_ncomp.o
gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-thBIeW/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dnn.c -o dnn.o
gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-thBIeW/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c gabriel.c -o gabriel.o
gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-thBIeW/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c gearyw.c -o gearyw.o
gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-thBIeW/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c gsymtest.c -o gsymtest.o
gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-thBIeW/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o
gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-thBIeW/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c insiders.c -o insiders.o
gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-thBIeW/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c jc.c -o jc.o
gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-thBIeW/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c knn.c -o knn.o
gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-thBIeW/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c lagw.c -o lagw.o
gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-thBIeW/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c listw2sn.c -o listw2sn.o
gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-thBIeW/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c nbdists.c -o nbdists.o
gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-thBIeW/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c perm_no_replace.c -o perm_no_replace.o
gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-thBIeW/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c polypoly.c -o polypoly.o
gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-thBIeW/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c relative.c -o relative.o
gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-thBIeW/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c skater.c -o skater.o
gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-thBIeW/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c symtest.c -o symtest.o
gcc -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o spdep.so card.o dfs_ncomp.o dnn.o gabriel.o gearyw.o gsymtest.o init.o insiders.o jc.o knn.o lagw.o listw2sn.o nbdists.o perm_no_replace.o polypoly.o relative.o skater.o symtest.o -llapack -lblas -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR
installing to /home/peng/R/spdep/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Error: package or namespace load failed for ‘sf’ in library.dynam(lib, package, package.lib):
shared object ‘sf.so’ not found
In addition: Warning message:
S3 methods ‘$.bbox’, ‘$.crs’, ‘$.m_range’, ‘$.z_range’, ‘$<-.sf’, ‘[.sf’, ‘[.sfc’, ‘[<-.sf’, ‘[<-.sfc’, ‘[[<-.sf’, ‘st_agr<-.sf’, ‘st_crs<-.bbox’, ‘st_crs<-.sf’, ‘st_crs<-.sfc’, ‘st_geometry<-.data.frame’, ‘st_geometry<-.sf’, ‘Ops.crs’, ‘Ops.sfc’, ‘Ops.sfg’, ‘Ops.sgbp’, ‘aggregate.sf’, ‘as.data.frame.sf’, ‘as.data.frame.sfc’, ‘as.data.frame.sgbp’, ‘as.matrix.sfg’, ‘as.matrix.sgbp’, ‘c.sfc’, ‘c.sfg’, ‘cbind.sf’, ‘dim.sgbp’, ‘duplicated.sf’, ‘format.bbox’, ‘format.crs’, ‘format.sfc’, ‘format.sfg’, ‘head.sfg’, ‘identify.sf’, ‘identify.sfc’, ‘is.na.bbox’, ‘is.na.crs’, ‘is.na.m_range’, ‘is.na.z_range’, ‘is_geometry_column.PqConnection’, ‘is_geometry_column.default’, ‘merge.sf’, ‘plot.sf’, ‘plot.sfc_CIRCULARSTRING’, ‘plot.sfc_GEOMETRY’, ‘plot.sfc_GEOMETRYCOLLECTION’, ‘plot.sfc_LINESTRING’, ‘pl [... truncated]
Execution halted
ERROR: lazy loading failed for package ‘spdep’
* removing ‘/home/peng/R/spdep’
* installing *source* package ‘Rcpp’ ...
** package ‘Rcpp’ successfully unpacked and MD5 sums checked
staged installation is only possible with locking
** using non-staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0’
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I../inst/include/ -fpic -g -O2 -fdebug-prefix-map=/build/r-base-thBIeW/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c api.cpp -o api.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I../inst/include/ -fpic -g -O2 -fdebug-prefix-map=/build/r-base-thBIeW/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c attributes.cpp -o attributes.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I../inst/include/ -fpic -g -O2 -fdebug-prefix-map=/build/r-base-thBIeW/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c barrier.cpp -o barrier.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I../inst/include/ -fpic -g -O2 -fdebug-prefix-map=/build/r-base-thBIeW/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c date.cpp -o date.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I../inst/include/ -fpic -g -O2 -fdebug-prefix-map=/build/r-base-thBIeW/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c module.cpp -o module.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I../inst/include/ -fpic -g -O2 -fdebug-prefix-map=/build/r-base-thBIeW/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rcpp_init.cpp -o rcpp_init.o
g++ -std=gnu++17 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o Rcpp.so api.o attributes.o barrier.o date.o module.o rcpp_init.o -L/usr/lib/R/lib -lR
installing to /home/peng/R/Rcpp/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (Rcpp)
ERROR: dependency ‘tidyr’ is not available for package ‘broom’
* removing ‘/home/peng/R/broom’
ERROR: dependency ‘gsl’ is not available for package ‘rtdists’
* removing ‘/home/peng/R/rtdists’
* installing *source* package ‘brms’ ...
** package ‘brms’ successfully unpacked and MD5 sums checked
staged installation is only possible with locking
** using non-staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (brms)
ERROR: dependencies ‘broom’, ‘tidyr’ are not available for package ‘mice’
* removing ‘/home/peng/R/mice’
The downloaded source packages are in
‘/tmp/RtmpP91s90/downloaded_packages’
Warning messages:
1: In install.packages(c("Rcpp", "brms"), dependencies = TRUE, INSTALL_opts = "--no-lock") :
installation of package ‘gsl’ had non-zero exit status
2: In install.packages(c("Rcpp", "brms"), dependencies = TRUE, INSTALL_opts = "--no-lock") :
installation of package ‘tidyr’ had non-zero exit status
3: In install.packages(c("Rcpp", "brms"), dependencies = TRUE, INSTALL_opts = "--no-lock") :
installation of package ‘spdep’ had non-zero exit status
4: In install.packages(c("Rcpp", "brms"), dependencies = TRUE, INSTALL_opts = "--no-lock") :
installation of package ‘broom’ had non-zero exit status
5: In install.packages(c("Rcpp", "brms"), dependencies = TRUE, INSTALL_opts = "--no-lock") :
installation of package ‘rtdists’ had non-zero exit status
6: In install.packages(c("Rcpp", "brms"), dependencies = TRUE, INSTALL_opts = "--no-lock") :
installation of package ‘mice’ had non-zero exit status
peng@PENG-MSI:~$ afni_system_check.py -check_all
-------------------------------- general ---------------------------------
architecture: 64bit ELF
cpu type: x86_64
system: Linux
release: 4.4.0-19041-Microsoft
version: #4355-Microsoft Thu Apr 12 17:37:00 PST 2024
distribution: ubuntu 20.04 focal
number of CPUs: 12
apparent login shell: bash
shell RC file: .bashrc (exists)
--------------------- AFNI and related program tests ---------------------
which afni : /home/peng/abin/afni
afni version : Precompiled binary linux_ubuntu_16_64: Oct 1 2024
: AFNI_24.3.00 'Elagabalus'
AFNI_version.txt : AFNI_24.3.00, linux_ubuntu_16_64, Oct 01 2024, official
which python : /usr/bin/python
python version : 3.8.10
which R : /usr/bin/R
R version : R version 4.4.1 (x86_64-pc-linux-gnu)
instances of various programs found in PATH:
afni : 1 (/home/peng/abin/afni)
R : 1 (/usr/bin/R)
python : 1 (/usr/bin/python3.8)
python2 : 0
python3 : 1 (/usr/bin/python3.8)
** have python3 but not python2
testing ability to start various programs...
afni : success
suma : success
3dSkullStrip : success
3dAllineate : success
3dRSFC : success
SurfMesh : success
3dClustSim : success
uber_subject.py : success
3dMVM : success
------------------------ dependent program tests -------------------------
checking for dependent programs...
which tcsh : /usr/bin/tcsh
tcsh version : 6.21.00
which Xvfb : /usr/bin/Xvfb
checking for R packages...
rPkgsInstall -pkgs ALL -check : FAILURE
oo Warning:
These packages are not installed on the computer: afex!
These packages are not installed on the computer: phia!
R RHOME : /usr/lib/R
------------------------------ python libs -------------------------------
++ module loaded: matplotlib.pyplot
module file : /usr/lib/python3/dist-packages/matplotlib/pyplot.py
matplotlib version : 3.1.2
** matplotlib version 3.1.2 cannot write jpeg images
++ module loaded: flask
module file : /usr/lib/python3/dist-packages/flask/__init__.py
flask version : 1.1.1
++ module loaded: flask_cors
module file : /usr/lib/python3/dist-packages/flask_cors/__init__.py
flask_cors version : 3.0.8
-------------------------------- env vars --------------------------------
PATH = /usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/mnt/c/Program Files/WindowsApps/CanonicalGroupLimited.Ubuntu20.04LTS_2004.6.16.0_x64__79rhkp1fndgsc:/mnt/c/WINDOWS/system32:/mnt/c/WINDOWS:/mnt/c/WINDOWS/System32/Wbem:/mnt/c/WINDOWS/System32/WindowsPowerShell/v1.0/:/mnt/c/WINDOWS/System32/OpenSSH/:/mnt/e/Matlab_R2021a/runtime/win64:/mnt/e/Matlab_R2021a/bin:/mnt/e/Matlab_R2021a/polyspace/bin:/mnt/c/Program Files/Microsoft SQL Server/150/Tools/Binn/:/mnt/c/Program Files/Microsoft SQL Server/Client SDK/ODBC/170/Tools/Binn/:/mnt/c/Program Files/dotnet/:/mnt/c/Users/A/AppData/Local/Microsoft/WindowsApps:/mnt/e/pycharm/PyCharm 2022.2.3/bin:/mnt/d/Anaconda:/mnt/d/Anaconda/Scripts:/mnt/d/Anaconda/Library/bin:/mnt/d/Anaconda/Library/mingw-w64/bin:/mnt/e/Mysql/bin:/mnt/c/Users/A/.dotnet/tools:/mnt/e/CLion/CLion 2023.1.4/bin:/mnt/d/Qt/6.2.4/mingw_64/bin:/mnt/d/Qt/6.2.4/mingw_64/lib:/mnt/d/Qt/Tools/mingw1120_64/bin:/mnt/d/Qt/Tools/mingw1120_64/lib:/snap/bin:/home/peng/abin
PYTHONPATH =
R_LIBS = /home/peng/R
LD_LIBRARY_PATH =
DYLD_LIBRARY_PATH =
DYLD_FALLBACK_LIBRARY_PATH =
CONDA_SHLVL =
CONDA_DEFAULT_ENV =
CC =
----------------------------- eval dot files -----------------------------
----------- AFNI $HOME files -----------
.afnirc : found
.sumarc : found
.afni/help/all_progs.COMP : found
--------- shell startup files ----------
-- good: .tcshrc seems to contain 'source .cshrc'
-- considered operations: path, apsearch
-- note: followers should not need edits, so edit flags should be 0
(have 1 follower(s), which can be ignored)
dot file test : want 1 modifications across 3 files:
file path flatdir apsearch follower
--------------- ---- ------- -------- --------
.cshrc 0 0 1 0
.tcshrc 0 0 0 1
.bashrc 0 0 0 0
------------------------------ data checks -------------------------------
data dir : missing AFNI_data6
data dir : missing AFNI_demos
data dir : missing suma_demo
data dir : missing afni_handouts
atlas : found TT_N27+tlrc under /home/peng/abin
------------------------------ OS specific -------------------------------
which apt-get : /usr/bin/apt-get
apt-get version : apt 2.0.10 (amd64)
have Ubuntu system: ubuntu 20.04 focal
have Ubuntu afni : Precompiled binary linux_ubuntu_16_64: Oct 1 2024
========================= summary, please fix: =========================
* just be aware: login shell 'bash', but our code examples use 'tcsh'
* missing R packages (see rPkgsInstall)
* matplotlib version 3.1.2 cannot write jpeg images
* dot file test : want 1 modifications across 3 files:
* insufficient data for AFNI bootcamp
(see "Prepare for Bootcamp" on install pages)
checking for R packages...
rPkgsInstall -pkgs ALL -check : FAILURE
oo Warning:
These packages are not installed on the computer: afex!
These packages are not installed on the computer: phia!