error while loading shared libraries

AFNI Message Board
1

I had the following skull stripping error when trying to run anatomy alignment transformation;

error while loading shared libraries: libgsl.so.0: cannot open shared object file: No such file or directory
** ERROR: Could not strip skull

2

Hello,

You just need to install that library. What operating system
and version are you using? If you are unsure, please post
or mail me the output of:

afni_system_check.py -check_all

Thanks,

  • rick
3

This error sometimes happens for different types of installations. The gsl libraries need to be installed, so be sure they were installed properly for your platform. Search our messageboard for similar problems and solutions like this one:

https://afni.nimh.nih.gov/afni/community/board/read.php?1,154234,154250#msg-154250

4

What system are you on, and what version of AFNI? Namely, what’s the output of:


afni -ver

?

Also helpful would be the output of


afni_system_check.py -check_all

.

–pt