When I open a terminal window and type “afni”, I get the following error. Note that I’ve put echo statements in my .bash_profile and .bashrc to verify they are being called and setting DYLD_LIBRARY_PATH correctly (I did this in response to the error, so know they are not causing the error):
Last login: Fri Feb 7 10:03:51 on ttys001
Running .bash_profile
RUNNING ~/.bashrc
-------- freesurfer-fsl-matlab-Darwin-OSX-stable-pub-v6.0.0-tutorial-2beb96c --------
Setting up environment for FreeSurfer/FS-FAST (and FSL)
FREESURFER_HOME /Applications/freesurfer
FSFAST_HOME /Applications/freesurfer/fsfast
FSF_OUTPUT_FORMAT nii.gz
SUBJECTS_DIR /Applications/freesurfer/subjects
MNI_DIR /Applications/freesurfer/mni
DYLD_LIBRARY_PATH is /opt/X11/lib/flat_namespace
~: afni
Precompiled binary macos_10.12_local: Jan 29 2020 (Version AFNI_20.0.04 ‘Galba’)
Thanks go to P Molfese for useful feedback
Initializing: X11[The X.Org Foundation v 11804000]… Widgets.
Fatal Signal 11 (SIGSEGV) received
Last STATUS: making imag->rowcol
AFNI_make_wid1
AFNI_make_widgets
new_AFNI_controller
MAIN_workprocess
AFNI:main
Bottom of Debug Stack
** AFNI version = AFNI_20.0.04 Compile date = Jan 29 2020
** [[Precompiled binary macos_10.12_local: Jan 29 2020]]
** Program Death **
** If you report this crash to the AFNI message board,
** please copy the error messages EXACTLY, and give
** the command line you used to run the program, and
** any other information needed to repeat the problem.
** You may later be asked to upload data to help debug.
** Crash log is appended to file /Users/knutsonk/.afni.crashlog
++ AFNI is detached from terminal.
~:
If I type “source ~/.bashrc”, afni works fine, but .bashrc was just run when the terminal window was open, so it’s unclear what is happening.
