but it ended up with the following error: ** error: option -regress_motion_per_run follows unknot arg #52 (-mask_epi_anat), and even removing that line the error still occurred likely related to a problem with(-mask_epi_anat. Do you have any suggestion?
– applying input view as +orig
** warning: removing first 2 TRs from beginning of each run
→ the stimulus timing files must reflect the removal of these TRs
** warning: have duplicate anat follower: aparc.a2009s+aseg.nii
** Failed “3dnvals -all /Users/giuliaavvenuti/Documents/H018/anatQQ.H018.nii”
** error in -tlrc_NL_warped_dsets p1: tlrc anat should be 1 volume,
but dataset anatQQ.H018.nii shows -1
** invalid block : tlrc
** Failed "3dnvals -all /Users/giuliaavvenuti/Documents/H018/anatQQ.H018.nii"
** error in -tlrc_NL_warped_dsets p1: tlrc anat should be 1 volume,
but dataset anatQQ.H018.nii shows -1
means that afni_proc.py cannot find your anatQQ.H018.nii file. In that usage, 3dnvals will return the four dimensions of your matrix (3 spatial, one time). For example, for my 152 vol dset here:
That suggests the dataset does not exist. What is the output of
ls -l anatQQ.H018.nii
or
3dinfo anatQQ.H018.nii
Are those datasets in a subdirectory?
rick
The
National Institute of Mental Health (NIMH) is part of the National Institutes of
Health (NIH), a component of the U.S. Department of Health and Human
Services.