Error message for ANOVA script

AFNI Message Board
1

Hi all,

When trying to run an ANOVA of my talairached data, I am getting the following error:


FATAL ERROR: can't open dataset '../fMRIdata/MM02/Allruns/DN+tlrc'

However, I do have that file in that directory path. I’ve also made sure that all of the dashes are allowed. Here is my script:


3dANOVA2 -type 3 -alevels 6 -blevels 18 \
-dset 1 2 ../fMRIdata/MM02/Allruns/DN+tlrc \
-dset 2 2 ../fMRIdata/MM02/Allruns/DW+tlrc \
-dset 3 2 ../fMRIdata/MM02/Allruns/DL+tlrc \
-dset 4 2 ../fMRIdata/MM02/Allruns/LN+tlrc \
-dset 5 2 ../fMRIdata/MM02/Allruns/LW+tlrc \
-dset 6 2 ../fMRIdata/MM02/Allruns/WN+tlrc \
-dset 1 3 ../fMRIdata/MM03/Allruns/DN+tlrc \
-dset 2 3 ../fMRIdata/MM03/Allruns/DW+tlrc \
-dset 3 3 ../fMRIdata/MM03/Allruns/DL+tlrc \
-dset 4 3 ../fMRIdata/MM03/Allruns/LN+tlrc \
-dset 5 3 ../fMRIdata/MM03/Allruns/LW+tlrc \
-dset 6 3 ../fMRIdata/MM03/Allruns/WN+tlrc \
-dset 1 4 ../fMRIdata/MM04/Allruns/DN+tlrc \
-dset 2 4 ../fMRIdata/MM04/Allruns/DW+tlrc \
-dset 3 4 ../fMRIdata/MM04/Allruns/DL+tlrc \
-dset 4 4 ../fMRIdata/MM04/Allruns/LN+tlrc \
-dset 5 4 ../fMRIdata/MM04/Allruns/LW+tlrc \
-dset 6 4 ../fMRIdata/MM04/Allruns/WN+tlrc \
-dset 1 5 ../fMRIdata/MM05/Allruns/DN+tlrc \
-dset 2 5 ../fMRIdata/MM05/Allruns/DW+tlrc \
-dset 3 5 ../fMRIdata/MM05/Allruns/DL+tlrc \
-dset 4 5 ../fMRIdata/MM05/Allruns/LN+tlrc \
-dset 5 5 ../fMRIdata/MM05/Allruns/LW+tlrc \
-dset 6 5 ../fMRIdata/MM05/Allruns/WN+tlrc \
-dset 1 6 ../fMRIdata/MM06/Allruns/DN+tlrc \
-dset 2 6 ../fMRIdata/MM06/Allruns/DW+tlrc \
-dset 3 6 ../fMRIdata/MM06/Allruns/DL+tlrc \
-dset 4 6 ../fMRIdata/MM06/Allruns/LN+tlrc \
-dset 5 6 ../fMRIdata/MM06/Allruns/LW+tlrc \
-dset 6 6 ../fMRIdata/MM06/Allruns/WN+tlrc \
-dset 1 7 ../fMRIdata/MM07/Allruns/DN+tlrc \
-dset 2 7 ../fMRIdata/MM07/Allruns/DW+tlrc \
-dset 3 7 ../fMRIdata/MM07/Allruns/DL+tlrc \
-dset 4 7 ../fMRIdata/MM07/Allruns/LN+tlrc \
-dset 5 7 ../fMRIdata/MM07/Allruns/LW+tlrc \
-dset 6 7 ../fMRIdata/MM07/Allruns/WN+tlrc \
-dset 1 8 ../fMRIdata/MM08/Allruns/DN+tlrc \
-dset 2 8 ../fMRIdata/MM08/Allruns/DW+tlrc \
-dset 3 8 ../fMRIdata/MM08/Allruns/DL+tlrc \
-dset 4 8 ../fMRIdata/MM08/Allruns/LN+tlrc \
-dset 5 8 ../fMRIdata/MM08/Allruns/LW+tlrc \
-dset 6 8 ../fMRIdata/MM08/Allruns/WN+tlrc \
-dset 1 9 ../fMRIdata/MM109/Allruns/DN+tlrc \
-dset 2 9 ../fMRIdata/MM109/Allruns/DW+tlrc \
-dset 3 9 ../fMRIdata/MM109/Allruns/DL+tlrc \
-dset 4 9 ../fMRIdata/MM109/Allruns/LN+tlrc \
-dset 5 9 ../fMRIdata/MM109/Allruns/LW+tlrc \
-dset 6 9 ../fMRIdata/MM109/Allruns/WN+tlrc \
-dset 1 10 ../fMRIdata/MM10/Allruns/DN+tlrc \
-dset 2 10 ../fMRIdata/MM10/Allruns/DW+tlrc \
-dset 3 10 ../fMRIdata/MM10/Allruns/DL+tlrc \
-dset 4 10 ../fMRIdata/MM10/Allruns/LN+tlrc \
-dset 5 10 ../fMRIdata/MM10/Allruns/LW+tlrc \
-dset 6 10 ../fMRIdata/MM10/Allruns/WN+tlrc \
-dset 1 11 ../fMRIdata/MM11/Allruns/DN+tlrc \
-dset 2 11 ../fMRIdata/MM11/Allruns/DW+tlrc \
-dset 3 11 ../fMRIdata/MM11/Allruns/DL+tlrc \
-dset 4 11 ../fMRIdata/MM11/Allruns/LN+tlrc \
-dset 5 11 ../fMRIdata/MM11/Allruns/LW+tlrc \
-dset 6 11 ../fMRIdata/MM11/Allruns/WN+tlrc \
-dset 1 14 ../fMRIdata/MM14/Allruns/DN+tlrc \
-dset 2 14 ../fMRIdata/MM14/Allruns/DW+tlrc \
-dset 3 14 ../fMRIdata/MM14/Allruns/DL+tlrc \
-dset 4 14 ../fMRIdata/MM14/Allruns/LN+tlrc \
-dset 5 14 ../fMRIdata/MM14/Allruns/LW+tlrc \
-dset 6 14 ../fMRIdata/MM14/Allruns/WN+tlrc \
-dset 1 15 ../fMRIdata/MM15/Allruns/DN+tlrc \
-dset 2 15 ../fMRIdata/MM15/Allruns/DW+tlrc \
-dset 3 15 ../fMRIdata/MM15/Allruns/DL+tlrc \
-dset 4 15 ../fMRIdata/MM15/Allruns/LN+tlrc \
-dset 5 15 ../fMRIdata/MM15/Allruns/LW+tlrc \
-dset 6 15 ../fMRIdata/MM15/Allruns/WN+tlrc \
-dset 1 16 ../fMRIdata/MM16/Allruns/DN+tlrc \
-dset 2 16 ../fMRIdata/MM16/Allruns/DW+tlrc \
-dset 3 16 ../fMRIdata/MM16/Allruns/DL+tlrc \
-dset 4 16 ../fMRIdata/MM16/Allruns/LN+tlrc \
-dset 5 16 ../fMRIdata/MM16/Allruns/LW+tlrc \
-dset 6 16 ../fMRIdata/MM16/Allruns/WN+tlrc \
-dset 1 17 ../fMRIdata/MM17/Allruns/DN+tlrc \
-dset 2 17 ../fMRIdata/MM17/Allruns/DW+tlrc \
-dset 3 17 ../fMRIdata/MM17/Allruns/DL+tlrc \
-dset 4 17 ../fMRIdata/MM17/Allruns/LN+tlrc \
-dset 5 17 ../fMRIdata/MM17/Allruns/LW+tlrc \
-dset 6 17 ../fMRIdata/MM17/Allruns/WN+tlrc \
-dset 1 18 ../fMRIdata/MM18/Allruns/DN+tlrc \
-dset 2 18 ../fMRIdata/MM18/Allruns/DW+tlrc \
-dset 3 18 ../fMRIdata/MM18/Allruns/DL+tlrc \
-dset 4 18 ../fMRIdata/MM18/Allruns/LN+tlrc \
-dset 5 18 ../fMRIdata/MM18/Allruns/LW+tlrc \
-dset 6 18 ../fMRIdata/MM18/Allruns/WN+tlrc \
-dset 1 19 ../fMRIdata/MM19/Allruns/DN+tlrc \
-dset 2 19 ../fMRIdata/MM19/Allruns/DW+tlrc \
-dset 3 19 ../fMRIdata/MM19/Allruns/DL+tlrc \
-dset 4 19 ../fMRIdata/MM19/Allruns/LN+tlrc \
-dset 5 19 ../fMRIdata/MM19/Allruns/LW+tlrc \
-dset 6 19 ../fMRIdata/MM19/Allruns/WN+tlrc \
-dset 1 20 ../fMRIdata/MM20/Allruns/DN+tlrc \
-dset 2 20 ../fMRIdata/MM20/Allruns/DW+tlrc \
-dset 3 20 ../fMRIdata/MM20/Allruns/DL+tlrc \
-dset 4 20 ../fMRIdata/MM20/Allruns/LN+tlrc \
-dset 5 20 ../fMRIdata/MM20/Allruns/LW+tlrc \
-dset 6 20 ../fMRIdata/MM20/Allruns/WN+tlrc \
-dset 1 21 ../fMRIdata/MM21/Allruns/DN+tlrc \
-dset 2 21 ../fMRIdata/MM21/Allruns/DW+tlrc \
-dset 3 21 ../fMRIdata/MM21/Allruns/DL+tlrc \
-dset 4 21 ../fMRIdata/MM21/Allruns/LN+tlrc \
-dset 5 21 ../fMRIdata/MM21/Allruns/LW+tlrc \
-dset 6 21 ../fMRIdata/MM21/Allruns/WN+tlrc \
-fa FtestlevelA \
-amean 1 DW \
-amean 2 DL \
-amean 3 DN \
-amean 4 LW \
-amean 5 LN \
-amean 6 WN \
-adiff 1 2 DW_DN \
-adiff 1 3 DL_DN \
-adiff 4 5 LW_LN \
-adiff 3 5 DN_LN \
-adiff 3 6 DN_WN \
-adiff 4 6 LN_WN \
-bucket grp2anova_blk_evt

Any glaring issues with this script that I may be missing?

Best,
Nicole

2

Hi Nicole,

To be sure, from that same directory, what is the output of:

ls -l ../fMRIdata/MM02/Allruns/DN+tlrc*
  • rick
3

HI Rick,

I’m getting the error message that there is not such file or directory.

Nicole

4

So you just need to get the correct directory and file names. Get it to work with the ‘ls’ command first, then fix the ANOVA script to match.

Once you get ‘ls’ working, there is also the option of using gen_group_command.py, with which you can avoid the repetitive typing.

  • rick