Hello,
I’m trying to run uber_subject.py on my mac (10.12.1 sierra), and I’m having error message as below.
**** failed to import PyQt4.QtGui ****
PyQt4 must be installed to run the uber_subject.py GUI
→ see the output of: uber_subject.py -help_install
However, I have already installed pyqt using “brew install pyqt5”
Below are messages after running " afni_system_check.py -check_all". Your help would be much appreciated!
Thanks,
Charlie
-------------------------------- general ---------------------------------
architecture: 64bit
system: Darwin
release: 16.1.0
version: Darwin Kernel Version 16.1.0: Thu Oct 13 21:26:57 PDT 2016; root:xnu-3789.21.3~60/RELEASE_X86_64
distribution: 10.12.1 x86_64
number of CPUs: 4
apparent login shell: tcsh
shell RC file: .cshrc (exists)
--------------------- AFNI and related program tests ---------------------
which afni : /Users/jglab/abin/afni
afni version : Precompiled binary macosx_10.7_Intel_64: Nov 21 2016
AFNI_version.txt : AFNI_16.3.12, macosx_10.7_Intel_64, Nov 21 2016
which python : /usr/bin/python
python version : 2.7.10
which R : /usr/local/bin/R
R version : R version 3.3.2 (2016-10-31) – “Sincere Pumpkin Patch”
which tcsh : /bin/tcsh
instances of various programs found in PATH:
afni : 1 (/Users/jglab/abin/afni)
R : 1 (/Library/Frameworks/R.framework/Versions/3.3/Resources/bin/R)
python : 1 (/usr/bin/python)
testing ability to start various programs…
afni : success
suma : success
3dSkullStrip : success
uber_subject.py : success
3dAllineate : success
3dRSFC : success
SurfMesh : success
checking for R packages…
rPkgsInstall -pkgs ALL -check : success
checking for $HOME files…
.afnirc : found
.sumarc : found
.afni/help/all_progs.COMP : found
------------------------------ python libs -------------------------------
** python module not found: PyQt4
-------------------------------- env vars --------------------------------
PATH = /sw/bin:/usr/bin:/usr/bin:/sw/bin:/usr/bin:/usr/local/bin:/bin:/usr/sbin:/sbin:/opt/X11/bin:/Users/jglab/abin
PYTHONPATH = /usr/local/lib/python2.7/site-packages
R_LIBS =
LD_LIBRARY_PATH =
DYLD_LIBRARY_PATH =
DYLD_FALLBACK_LIBRARY_PATH =
------------------------------ data checks -------------------------------
data dir : found AFNI_data6 under $HOME/afni
top history: … 2016 [rickr]: updated proc scripts and PPI examples
data dir : missing suma_demo
data dir : missing FATCAT_DEMO
data dir : missing afni_handouts
atlas : found TT_N27+tlrc under /Users/jglab/abin
------------------------------ OS specific -------------------------------
which brew : /usr/local/bin/brew
brew version : Homebrew 1.1.2
++ found valid link /usr/local/lib/libgomp.1.dylib
to /usr/local/Cellar/gcc/6.2.0/lib/gcc/6/libgomp.1.dylib
++ found valid link /usr/local/lib/libglib-2.0.dylib
to …/Cellar/glib/2.50.2/lib/libglib-2.0.dylib
++ found 1 dylib files under ‘/opt/X11/lib/flat_namespace’
– found ‘libXt’ dylib files, e.g. /opt/X11/lib/flat_namespace/libXt.6.dylib
** env var DYLD_LIBRARY_PATH is not set to contain /opt/X11/lib/flat_namespace
(so afni and suma may fail)
============================ summary comments ============================
- insufficient data for AFNI bootcamp
- consider running: brew install pyqt
- cannot tell if DYLD_LIBRARY_PATH includes /opt/X11/lib/flat_namespace