Error: Can't open display: in fat_proc_select_vols

AFNI Message Board
1

Hi
In server without GUI, so it echos errors like title. To make sure that the pipeline going on, how to rescript this command:

I/O path, same as before

set path_P_ss = data_proc/SUBJ_001

fat_proc_select_vols
-in_dwi $path_P_ss/dwi_00/ap.nii.gz
-in_img $path_P_ss/dwi_00/ap_sepscl.sag.png
-prefix $path_P_ss/dwi_01/dwi_sel_ap

fat_proc_select_vols
-in_dwi $path_P_ss/dwi_00/pa.nii.gz
-in_img $path_P_ss/dwi_00/pa_sepscl.sag.png
-in_bads $path_P_ss/dwi_01/dwi_sel_ap_bads.txt
-prefix $path_P_ss/dwi_01/dwi_sel_both

Thanks.
rujing

2

Hi, Rujing-

To use that program, you specifically need to be on a system where a GUI can open up. As described here:
https://afni.nimh.nih.gov/pub/dist/doc/htmldoc/tutorials/fatcat_prep/Prepreprocessing_II.html#fat-proc-select-vols-gui-to-select-baddies-and-make-good-list
the program opens up a sheet of images to be selected. You will either need to do that from your local system or use “ssh -X …” or something like that.

–pt