/bin/sh: @auto_tlrc: command not found

AFNI Message Board
1

I’m getting this error message when running afni_proc.py:

#Script is running (command trimmed):
3dcopy /Users/kk/abin/MNI152_T1_2009c+tlrc ./base.nii
++ 3dcopy: AFNI version=AFNI_19.2.20 (Aug 27 2019) [64-bit]
#++ Aligning /Volumes/shares/…/New_analysis/CFS_325/Visit1/CFS_325_Visit1_RS123/1/CFS_325.Visit1.1.results/awpy/base.nii data to /Volumes/shares/…/New_analysis/CFS_325/Visit1/CFS_325_Visit1_RS123/1/CFS_325.Visit1.1.results/awpy/anat.un.nii data
#Script is running (command trimmed):
@auto_tlrc -base ./base.nii -input ./anat.un.nii -suffix .aff -no_ss -no_pre -init_xform CENTER
/bin/sh: @auto_tlrc: command not found
#**ERROR Failed in affine step
** ERROR - script failed
3dbucket: No match.

2

Howdy-

Hmm, OK. We did have a minor “git” mishap with @auto_tlrc, but I think all the binaries that we distribute were unaffected. Do you compile+build AFNI on your computer?

What are the outputs of:
A)


afni -ver

B)


which @auto_tlrc

?

–pt

3

afni -ver
Precompiled binary macos_10.12_local: Aug 27 2019 (Version AFNI_19.2.20 ‘Claudius’)
which @auto_tlrc

(returns a blank)

4

Hi-

OK. We did a build last night, which should have @auto_tlrc in it. Can you please update your local AFNI via the usual:


@update.afni.binaries -d

… and see if


which @auto_tlrc

now returns a path to it? If so, you should be all set.

Sorry for the hassle-- we had a git blip whereby the program was deleted from the distribution, but it has been added back.

–pt

5

Yep, updated afni today, and @auto_tlrc is now found and working. Thanks.

6

Rockin’.

–pt