I have a 3d nifti image. When I open it by afni and want to see the axial plane and the coronal plane pups up. I know there is something wrong with my date. Do you have any idea how I can fix this issue? I have tried registration and transformations before but wasn’t successful.
I think there is bad header information in that dset, which defines what plane has what interpretation.
It is possible to just re-set (or “refit”) the header information, but it would be good to know how this came about. Where did this dataset originate, and what conversion/processing steps have been performed on it?