How can I solve this problems...
I used the codes below
cd
curl -O https://raw.githubusercontent.com/afni/afni/master/src/other_builds/OS_notes.macos_12_ARM_a_admin_pt1.zsh
curl -O https://raw.githubusercontent.com/afni/afni/master/src/other_builds/OS_notes.macos_12_ARM_a_admin_pt2.zsh
curl -O https://raw.githubusercontent.com/afni/afni/master/src/other_builds/OS_notes.macos_12_ARM_b_user.tcsh
zsh OS_notes.macos_12_ARM_a_admin_pt1.zsh
zsh OS_notes.macos_12_ARM_a_admin_pt2.zsh
tcsh OS_notes.macos_12_ARM_b_user.tcsh
curl -OL https://repo.continuum.io/miniconda/Miniconda3-latest-MacOSX-arm64.sh
bash Miniconda3-latest-MacOSX-arm64.sh -b
~/miniconda3/bin/conda init bash tcsh zsh
curl -O https://afni.nimh.nih.gov/pub/dist/tgz/macos_10.12_local.tgz
curl -O https://afni.nimh.nih.gov/pub/dist/tgz/afni_src.tgz
And the result is..
-------------------------------- general ---------------------------------
architecture: 64bit
cpu type: arm
system: Darwin
release: 23.5.0
version: Darwin Kernel Version 23.5.0: Wed May 1 20:12:58 PDT 2024; root:xnu-10063.121.3~5/RELEASE_ARM64_T6000
distribution: 14.5
number of CPUs: 8
apparent login shell: tcsh
** have both .cshrc and .tcshrc, with former not applied
(consider adding 'source $HOME/.cshrc' to $HOME/.tcshrc)
shell RC file: .tcshrc (exists)
--------------------- AFNI and related program tests ---------------------
which afni :
:
AFNI_version.txt : AFNI_24.1.22, anyos_text, Jun 21 2024, local
which python : /Users/lynn/miniconda3/bin/python
python version : 3.12.4
which R : /usr/local/bin/R
R version : R version 4.3.1 (aarch64-apple-darwin20)
instances of various programs found in PATH:
afni : 0
R : 1 (/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/bin/R)
python : 1 (/Users/lynn/miniconda3/bin/python3.12)
python2 : 0
python3 : 3
/Users/lynn/miniconda3/bin/python3.12
/Library/Frameworks/Python.framework/Versions/3.10/bin/python3.10
/usr/bin/python3
** have python3 but not python2
testing ability to start various programs...
afni : FAILURE
/bin/sh: afni: command not found
suma : FAILURE
/bin/sh: suma: command not found
3dSkullStrip : FAILURE
/bin/sh: 3dSkullStrip: command not found
3dAllineate : FAILURE
/bin/sh: 3dAllineate: command not found
3dRSFC : FAILURE
/bin/sh: 3dRSFC: command not found
SurfMesh : FAILURE
/bin/sh: SurfMesh: command not found
3dClustSim : FAILURE
/bin/sh: 3dClustSim: command not found
uber_subject.py : FAILURE
/bin/sh: uber_subject.py: command not found
3dMVM : FAILURE
/bin/sh: 3dMVM: command not found
have failures, testing programs under implied /Users/lynn/abin...
afni : FAILURE
/bin/sh: /Users/lynn/abin/afni: No such file or directory
suma : FAILURE
/bin/sh: /Users/lynn/abin/suma: No such file or directory
3dSkullStrip : FAILURE
/bin/sh: /Users/lynn/abin/3dSkullStrip: No such file or directory
3dAllineate : FAILURE
/bin/sh: /Users/lynn/abin/3dAllineate: No such file or directory
3dRSFC : FAILURE
/bin/sh: /Users/lynn/abin/3dRSFC: No such file or directory
SurfMesh : FAILURE
/bin/sh: /Users/lynn/abin/SurfMesh: No such file or directory
3dClustSim : FAILURE
/bin/sh: /Users/lynn/abin/3dClustSim: No such file or directory
uber_subject.py : success
3dMVM : success
------------------------ dependent program tests -------------------------
checking for dependent programs...
which tcsh : /bin/tcsh
tcsh version : 6.21.00
which Xvfb : /opt/X11/bin/Xvfb
checking for R packages...
rPkgsInstall -pkgs ALL -check : FAILURE
/bin/sh: rPkgsInstall: command not found
R RHOME : /Library/Frameworks/R.framework/Resources
------------------------------ python libs -------------------------------
** failed to load module matplotlib.pyplot
-- matplotlib.pyplot is required
** failed to load module flask
-- flask is not required, but is desirable
** failed to load module flask_cors
-- flask_cors is not required, but is desirable
-- python binaries under /usr/local/bin:
/usr/local/bin/python3 (sym link to /Library/Frameworks/Python.framework/Versions/3.10/bin/python3.10)
-------------------------------- env vars --------------------------------
PATH = /Users/lynn/miniconda3/bin:/Users/lynn/miniconda3/condabin:/usr/local/bin:/System/Cryptexes/App/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/local/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/appleinternal/bin:/opt/X11/bin:/Library/Apple/usr/bin:/Applications/VMware Fusion.app/Contents/Public:/usr/local/share/dotnet:~/.dotnet/tools:/Library/Frameworks/Mono.framework/Versions/Current/Commands
PYTHONPATH =
R_LIBS =
LD_LIBRARY_PATH =
DYLD_LIBRARY_PATH (sub-shell) =
DYLD_FALLBACK_LIBRARY_PATH (sub-shell) =
CONDA_SHLVL = 1
CONDA_DEFAULT_ENV = base
----------------------------- eval dot files -----------------------------
----------- AFNI $HOME files -----------
.afnirc : found
.sumarc : found
.afni/help/all_progs.COMP : found
--------- shell startup files ----------
init_user_dotfiles.py: Command not found.
------------------------------ data checks -------------------------------
data dir : found AFNI_data6 under $HOME (471482M Avail)
top history: ... 2024 [rickr]: 3drefit -newid FT/SUMA/FT_SurfVol.nii
data dir : found AFNI_demos under $HOME
top history: ...ct 2020 [taylorp]: updated scripts under FATCAT_DEMO
data dir : found suma_demo under $HOME
top history: ...s_New/data/Build_tmp on Mon Mar 4 11:56:45 EST 2013
data dir : found afni_handouts under $HOME
atlas : did not find TT_N27+tlrc
------------------------------ OS specific -------------------------------
XQuartz version : 2.8.5
** no package manager found (okay for bootcamp)
========================= summary, please fix: =========================
* have both .cshrc and .tcshrc, with former not applied
(consider adding 'source $HOME/.cshrc' to $HOME/.tcshrc)
* missing program: afni
* failure under initial "AFNI and related program tests"
* AFNI programs show FAILURE
* consider adding /Users/lynn/abin to your PATH
* missing R packages (see rPkgsInstall)
* python library matplotlib is required
(see AFNI install docs for details)
* failure running init_user_dotfiles.py -test
* possibly missing atlases