I believe I am using the windows subsystem linux ubunto but not 100% sure about that. This is the output of uname -a if it helps: Linux xorn 4.4.0-171-generic #200-Ubuntu SMP Tue Dec 3 11:04:55 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux
Here’s the output of the check:
-------------------------------- general ---------------------------------
architecture: 64bit ELF
system: Linux
release: 4.4.0-171-generic
version: #200-Ubuntu SMP Tue Dec 3 11:04:55 UTC 2019
distribution: Ubuntu 16.04 xenial
number of CPUs: 192
apparent login shell: bash
shell RC file: .bashrc (exists)
--------------------- AFNI and related program tests ---------------------
which afni : /share/imaging/afni/20200729/afni
afni version : Precompiled binary linux_ubuntu_16_64: Jul 23 2020
: AFNI_20.2.06 ‘Aulus Vitellius’
AFNI_version.txt : AFNI_20.2.06, linux_ubuntu_16_64, Jul 23 2020
which python : /usr/bin/python
python version : 2.7.12
which R : /usr/bin/R
R version : R version 3.6.2 (2019-12-12) – “Dark and Stormy Night”
which tcsh : /usr/bin/tcsh
instances of various programs found in PATH:
afni : 1 (/share/imaging/afni/20200729/afni)
R : 1 (/usr/lib/R/bin/R)
python : 1 (/usr/bin/python2.7)
python2 : 1 (/usr/bin/python2.7)
python3 : 1 (/usr/bin/python3.5)
testing ability to start various programs…
afni : success
suma : success
3dSkullStrip : success
uber_subject.py : success
3dAllineate : success
3dRSFC : success
SurfMesh : success
3dClustSim : success
3dMVM : success
checking for R packages…
rPkgsInstall -pkgs ALL -check : FAILURE
oo Warning:
These packages are not installed on the computer: metafor!
R RHOME : /usr/lib/R
checking for $HOME files…
.afnirc : found
.sumarc : found
.afni/help/all_progs.COMP : found
------------------------------ python libs -------------------------------
++ module loaded: PyQt4
module file : /usr/lib/python2.7/dist-packages/PyQt4/init.pyc
++ module loaded: matplotlib.pyplot
module file : /usr/local/lib/python2.7/dist-packages/matplotlib/pyplot.pyc
-------------------------------- env vars --------------------------------
PATH = /share/imaging/afni/20200729:/share/imaging/rstudio/1.2-gpu:/share/imaging/bin:/opt/anaconda2/bin:/usr/local/sbin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/usr/local/bin:/usr/local/lib/python2.7/dist-packages/numpy/.libs
PYTHONPATH = /usr/local/python
R_LIBS =
LD_LIBRARY_PATH =
DYLD_LIBRARY_PATH =
DYLD_FALLBACK_LIBRARY_PATH =
------------------------------ data checks -------------------------------
data dir : missing AFNI_data6
data dir : missing AFNI_demos
data dir : missing suma_demo
data dir : missing afni_handouts
atlas : found TT_N27+tlrc under /share/imaging/afni/20200729
------------------------------ OS specific -------------------------------
which apt-get : /usr/bin/apt-get
apt-get version : apt 1.2.32ubuntu0.1 (amd64)
have Ubuntu system: Ubuntu 16.04 xenial
have Ubuntu afni : Precompiled binary linux_ubuntu_16_64: Jul 23 2020
========================= summary, please fix: =========================
- just be aware: login shell ‘bash’, but our code examples use ‘tcsh’
- missing R packages (see rPkgsInstall)
- insufficient data for AFNI bootcamp
The only errors it brings up seem to be only relevant for afni bootcamp.
Thanks for helping with this!