Hii,
so i used unna_mri_DSPH_RSA + nmi as cost function rerun animal_warper,
Starting processing pipeline...
Input file: .../fusi/mri_unna/unna_mri_DSPH_RSA+orig
Output directory: .../fusi/mri_unna/aw_results2
Preprocessing directory: .../fusi/mri_unna/preproc_unna
Running @animal_warper with the following command:
@animal_warper -input ".../fusi/mri_unna/unna_mri_DSPH_RSA+orig" -base ".../fusi/atlas/template_T1w.nii.gz" -outdir ".../fusi/mri_unna/aw_results2" -skullstrip ".../fusi/atlas/mask_brain.nii.gz" -cost nmi -ok_to_exist
and got error at the warping stage
here is the relevant stdout.log part
#++ auto_warp.py version: 0.06
-- clearing AFNI_COMPRESSOR ...
# Output directory .../fusi/mri_unna/aw_results2/awpy_unna_mri_DSPH_RSA_pshft/
#Script is running (command trimmed):
mkdir ./awpy_unna_mri_DSPH_RSA_pshft/
cd .../fusi/mri_unna/aw_results2/awpy_unna_mri_DSPH_RSA_pshft/
#Script is running (command trimmed):
3dcopy .../fusi/mri_unna/aw_results2/intermediate/unna_mri_DSPH_RSA_shft_aff.nii.gz ./anat.nii
#Script is running (command trimmed):
3dUnifize -GM -input ./anat.nii -prefix ./anat.un.nii
#Script is running (command trimmed):
3dcopy .../fusi/atlas/template_T1w.nii.gz ./base.nii
#Script is running (command trimmed):
3dAttribute DELTA ./anat.un.nii
#Script is running (command trimmed):
3dAttribute DELTA ./base.nii
0.200000 0.200000
#Script is running (command trimmed):
3dinfo -same_grid ./anat.un.nii ./base.nii
#++ Aligning .../fusi/mri_unna/aw_results2/awpy_unna_mri_DSPH_RSA_pshft/base.nii data to .../fusi/mri_unna/aw_results2/awpy_unna_mri_DSPH_RSA_pshft/anat.un.nii data
#Script is running (command trimmed):
3dQwarp -prefix ./anat.un.qw.nii -blur -3 -3 -workhard:0:2 -iwarp \
-maxlev 09 \
-nmi -base ./base.nii -source ./anat.un.nii
#**ERROR Failed in warping step
** ERROR - script failed
** ERROR: program failed (autowarp cp)
here is the relevant stderr.log part
AFNI QUITTs!
[1] Done Xvfb :277 -screen 0 1024x768x24
+++ Transforming all input to rgb for a good reason
+++ Writing image to ../init_qc_02.input_aff+base.jpg
++ 3dcopy: AFNI version=AFNI_24.3.05 (Oct 26 2024) [64-bit]
++ 3dUnifize: AFNI version=AFNI_24.3.05 (Oct 26 2024) [64-bit]
+ Pre-processing: ADVUWm
++ Output dataset ./anat.un.nii
++ ===== CPU time = 3.0 sec Elapsed = 0.7
++ 3dcopy: AFNI version=AFNI_24.3.05 (Oct 26 2024) [64-bit]
OMP: Info #276: omp_set_nested routine deprecated, please use omp_set_max_active_levels instead.
++ OpenMP thread count = 12
++ 3dQwarp: AFNI version=AFNI_24.3.05 (Oct 26 2024) [64-bit]
++ Authored by: Zhark the (Hermite) Cubically Warped
e[7m** FATAL ERROR:e[0m 3dQwarp fails :: source image has 0 nonzero voxels (< 100)
** Program compile date = Oct 26 2024
3dcopy: No match.
3dcopy: No match.
sad, is it the same problem related to the rotation problem or a different problem?