Dear AFNI Experts,
I am currently trying to run a paired t-test using the 3dttest, I have my script written as below and I have made sure there’s no space issues. However, the error of “not recognizing set A” keeps occurring. I’d greatly appreciated if you could provide some guidance on this. Many thanks, Sarah
3dttest++ -prefix 3dttest_prepost_covar.nii.gz
-mask mask_1.5mm.nii
-paired
-AminusB
-center ‘37.93243243,1.441123377’
-covariates Covar_prepost.txt
-SetA pre
pa0080 /home/sf674/MM_AFNI/AD_pre/smwc1pa0080_sinha_stack3d_S002_reorient.nii
pa0086 /home/sf674/MM_AFNI/AD_pre/smwc1pa0086_sinha_stack3d_S002.nii
pa0128 /home/sf674/MM_AFNI/AD_pre/smwc1pa0128_sinha_stack3d_S002.nii
pb3235 /home/sf674/MM_AFNI/AD_pre/smwc1pb3235_sinha_stack3d_S002.nii
pa0274 /home/sf674/MM_AFNI/AD_pre/smwc1pa0274_sinha_stack3d_S002.nii
pa0349 /home/sf674/MM_AFNI/AD_pre/smwc1pa0349_sinha_stack3d_S002.nii
pa0347 /home/sf674/MM_AFNI/AD_pre/smwc1pa0347_sinha_stack3d_S002.nii
pa0390 /home/sf674/MM_AFNI/AD_pre/smwc1pa0390_sinha_stack3d_S002.nii
pa0419 /home/sf674/MM_AFNI/AD_pre/smwc1pa0419_sinha_stack3d_S002.nii
pa0479 /home/sf674/MM_AFNI/AD_pre/smwc1pa0479_sinha_stack3d_S002.nii
pa0507 /home/sf674/MM_AFNI/AD_pre/smwc1pa0507_sinha_stack3d_S002.nii
pa0522 /home/sf674/MM_AFNI/AD_pre/smwc1pa0522_sinha_stack3d_S003.nii
pa0660 /home/sf674/MM_AFNI/AD_pre/smwc1pa0660_sinha_stack3d_S002.nii
pa0671 /home/sf674/MM_AFNI/AD_pre/smwc1pa0671_sinha_stack3d_S002.nii
pa0836 /home/sf674/MM_AFNI/AD_pre/smwc1pa0836_sinha_stack3d_S002.nii
pa0853 /home/sf674/MM_AFNI/AD_pre/smwc1pa0853_sinha_stack3d_S002.nii
pa0867 /home/sf674/MM_AFNI/AD_pre/smwc1pa0867_sinha_stack3d_S002.nii
pb8201 /home/sf674/MM_AFNI/AD_pre/smwc1pb8201_sinha_stack3d_S002.nii
pa1174 /home/sf674/MM_AFNI/AD_pre/smwc1pa1174_sinha_stack3d_S002.nii
pa1279 /home/sf674/MM_AFNI/AD_pre/smwc1pa1279_sinha_stack3d_S002.nii
pa1335 /home/sf674/MM_AFNI/AD_pre/smwc1pa1335_sinha_stack3d_S002.nii
pb8654 /home/sf674/MM_AFNI/AD_pre/smwc1pb8654_sinha_stack3d_S002.nii
pa1426 /home/sf674/MM_AFNI/AD_pre/smwc1pa1426_sinha_stack3d_S002.nii
pa1657 /home/sf674/MM_AFNI/AD_pre/smwc1pa1657_sinha_stack3d_S002.nii
pa1875 /home/sf674/MM_AFNI/AD_pre/smwc1pa1875_sinha_stack3d_S002.nii
pa1955 /home/sf674/MM_AFNI/AD_pre/smwc1pa1955_sinha_stack3d_S002.nii
pa2049 /home/sf674/MM_AFNI/AD_pre/smwc1pa2049_sinha_stack3d_S002.nii
pb0135 /home/sf674/MM_AFNI/AD_pre/smwc1pb0135_sinha_stack3d_S002.nii
pb9894 /home/sf674/MM_AFNI/AD_pre/smwc1pb9894_sinha_stack3d_S002.nii
pb9983 /home/sf674/MM_AFNI/AD_pre/smwc1pb9983_sinha_stack3d_S002.nii
pb10174 /home/sf674/MM_AFNI/AD_pre/smwc1pb10174_sinha_stack3d_S002.nii
pb10296 /home/sf674/MM_AFNI/AD_pre/smwc1pb10296_sinha_stack3d_S002.nii
pb0842 /home/sf674/MM_AFNI/AD_pre/smwc1pb0842_sinha_stack3d_S002.nii
pb0897 /home/sf674/MM_AFNI/AD_pre/smwc1pb0897_sinha_stack3d_S002.nii
pb1906 /home/sf674/MM_AFNI/AD_pre/smwc1pb1906_sinha_stack3d_S002.nii
pb2321 /home/sf674/MM_AFNI/AD_pre/smwc1pb2321_sinha_stack3d_S002.nii
pb2624 /home/sf674/MM_AFNI/AD_pre/smwc1pb2624_sinha_stack3d_S002.nii
pb2916 /home/sf674/MM_AFNI/AD_pre/smwc1pb2916_sinha_stack3d_S002.nii
pb3023 /home/sf674/MM_AFNI/AD_pre/smwc1pb3023_sinha_stack3d_S002.nii
pb2969 /home/sf674/MM_AFNI/AD_pre/smwc1pb2969_sinha_stack3d_S002.nii
pb3892 /home/sf674/MM_AFNI/AD_pre/smwc1pb3892_sinha_stack3d_S002.nii
pb3994 /home/sf674/MM_AFNI/AD_pre/smwc1pb3994_sinha_stack3d_S002.nii
pb4448 /home/sf674/MM_AFNI/AD_pre/smwc1pb4448_sinha_stack3d_S002.nii
pb7013 /home/sf674/MM_AFNI/AD_pre/smwc1pb7013_sinha_stack3d_S002.nii
pa0913 /home/sf674/MM_AFNI/AD_pre/smwc1pa0913_sinha_stack3d_S002.nii
pb7700 /home/sf674/MM_AFNI/AD_pre/smwc1pb7700_sinha_stack3d_S002.nii
pb7874 /home/sf674/MM_AFNI/AD_pre/smwc1pb7874_sinha_stack3d_S002.nii
pb8234 /home/sf674/MM_AFNI/AD_pre/smwc1pb8234_sinha_stack3d_S002.nii
pb8468 /home/sf674/MM_AFNI/AD_pre/smwc1pb8468_sinha_stack3d_S002.nii
pb9010 /home/sf674/MM_AFNI/AD_pre/smwc1pb9010_sinha_stack3d_S002.nii
pb9111 /home/sf674/MM_AFNI/AD_pre/smwc1pb9111_sinha_stack3d_S002.nii
pb9505 /home/sf674/MM_AFNI/AD_pre/smwc1pb9505_sinha_stack3d_S002.nii
pb9464 /home/sf674/MM_AFNI/AD_pre/smwc1pb9464_sinha_stack3d_S002.nii
tb1520 /home/sf674/MM_AFNI/AD_pre/smwc1tb1520_sinha_stack3d_S002.nii
tb1757 /home/sf674/MM_AFNI/AD_pre/smwc1tb1757_sinha_stack3d_S002.nii
tb1958 /home/sf674/MM_AFNI/AD_pre/smwc1tb1958_sinha_stack3d_S002.nii
tb2177 /home/sf674/MM_AFNI/AD_pre/smwc1tb2177_sinha_stack3d_S002.nii
tb2368 /home/sf674/MM_AFNI/AD_pre/smwc1tb2368_sinha_stack3d_S002.nii
tb3028 /home/sf674/MM_AFNI/AD_pre/smwc1tb3028_sinha_stack3d_S002.nii
tb3080 /home/sf674/MM_AFNI/AD_pre/smwc1tb3080_sinha_stack3d_S002.nii
tb3597 /home/sf674/MM_AFNI/AD_pre/smwc1tb3597_sinha_stack3d_S002.nii
tb3789 /home/sf674/MM_AFNI/AD_pre/smwc1tb3789_sinha_stack3d_S002.nii
tb3815 /home/sf674/MM_AFNI/AD_pre/smwc1tb3815_sinha_stack3d_S002.nii
tb4051 /home/sf674/MM_AFNI/AD_pre/smwc1tb4051_sinha_stack3d_S002.nii
tb4207 /home/sf674/MM_AFNI/AD_pre/smwc1tb4207_sinha_stack3d_S002.nii
tb4541 /home/sf674/MM_AFNI/AD_pre/smwc1tb4541_sinha_stack3d_S002.nii
tb4718 /home/sf674/MM_AFNI/AD_pre/smwc1tb4718_sinha_stack3d_S002.nii
tb4674 /home/sf674/MM_AFNI/AD_pre/smwc1tb4674_sinha_stack3d_S002.nii
tb4646 /home/sf674/MM_AFNI/AD_pre/smwc1tb4646_sinha_stack3d_S002.nii
tb4759 /home/sf674/MM_AFNI/AD_pre/smwc1tb4759_sinha_stack3d_S003.nii
tb5071 /home/sf674/MM_AFNI/AD_pre/smwc1tb5071_sinha_stack3d_S002.nii
tb5112 /home/sf674/MM_AFNI/AD_pre/smwc1tb5112_sinha_stack3d_S002.nii
tb5185 /home/sf674/MM_AFNI/AD_pre/smwc1tb5185_sinha_stack3d_S002.nii
tb5220 /home/sf674/MM_AFNI/AD_pre/smwc1tb5220_sinha_stack3d_S002.nii
-SetB
pa0230 /home/sf674/MM_AFNI/AD_post/smwc1pa0230_sinha_stack3d_S002.nii
pa0242 /home/sf674/MM_AFNI/AD_post/smwc1pa0242_sinha_stack3d_S002.nii
pa0266 /home/sf674/MM_AFNI/AD_post/smwc1pa0266_sinha_stack3d_S002.nii
pa0351 /home/sf674/MM_AFNI/AD_post/smwc1pa0351_sinha_stack3d_S002.nii
pa0363 /home/sf674/MM_AFNI/AD_post/smwc1pa0363_sinha_stack3d_S002.nii
pa0396 /home/sf674/MM_AFNI/AD_post/smwc1pa0396_sinha_stack3d_S002.nii
pa0404 /home/sf674/MM_AFNI/AD_post/smwc1pa0404_sinha_stack3d_S002.nii
pa0500 /home/sf674/MM_AFNI/AD_post/smwc1pa0500_sinha_stack3d_S002.nii
pa0531 /home/sf674/MM_AFNI/AD_post/smwc1pa0531_sinha_stack3d_S002.nii
pa0595 /home/sf674/MM_AFNI/AD_post/smwc1pa0595_sinha_stack3d_S002.nii
pa0631 /home/sf674/MM_AFNI/AD_post/smwc1pa0631_sinha_stack3d_S002.nii
pa0651 /home/sf674/MM_AFNI/AD_post/smwc1pa0651_sinha_stack3d_S002.nii
pa0775 /home/sf674/MM_AFNI/AD_post/smwc1pa0775_sinha_stack3d_S002.nii
pa0790 /home/sf674/MM_AFNI/AD_post/smwc1pa0790_sinha_stack3d_S002.nii
pa0942 /home/sf674/MM_AFNI/AD_post/smwc1pa0942_sinha_stack3d_S002.nii
pa0959 /home/sf674/MM_AFNI/AD_post/smwc1pa0959_sinha_stack3d_S002.nii
pa0975 /home/sf674/MM_AFNI/AD_post/smwc1pa0975_sinha_stack3d_S002.nii
pa1272 /home/sf674/MM_AFNI/AD_post/smwc1pa1272_sinha_stack3d_S002.nii
pa1311 /home/sf674/MM_AFNI/AD_post/smwc1pa1311_sinha_stack3d_S002.nii
pa1448 /home/sf674/MM_AFNI/AD_post/smwc1pa1448_sinha_stack3d_S002.nii
pa1492 /home/sf674/MM_AFNI/AD_post/smwc1pa1492_sinha_stack3d_S002.nii
pa1532 /home/sf674/MM_AFNI/AD_post/smwc1pa1532_sinha_stack3d_S002.nii
pa1581 /home/sf674/MM_AFNI/AD_post/smwc1pa1581_sinha_stack3d_S002.nii
pa1800 /home/sf674/MM_AFNI/AD_post/smwc1pa1800_sinha_stack3d_S002.nii
pa2003 /home/sf674/MM_AFNI/AD_post/smwc1pa2003_sinha_stack3d_S002.nii
pa2090 /home/sf674/MM_AFNI/AD_post/smwc1pa2090_sinha_stack3d_S002.nii
pa2187 /home/sf674/MM_AFNI/AD_post/smwc1pa2187_sinha_stack3d_S002.nii
pb0428 /home/sf674/MM_AFNI/AD_post/smwc1pb0428_sinha_stack3d_S002.nii
pb1011 /home/sf674/MM_AFNI/AD_post/smwc1pb10113_sinha_stack3d_S002.nii
pb1035 /home/sf674/MM_AFNI/AD_post/smwc1pb10358_sinha_stack3d_S002.nii
pb1038 /home/sf674/MM_AFNI/AD_post/smwc1pb10382_sinha_stack3d_S002.nii
pb1055 /home/sf674/MM_AFNI/AD_post/smwc1pb10558_sinha_stack3d_S002.nii
pb1125 /home/sf674/MM_AFNI/AD_post/smwc1pb1125_sinha_stack3d_S002.nii
pb1173 /home/sf674/MM_AFNI/AD_post/smwc1pb1173_sinha_stack3d_S002.nii
pb2194 /home/sf674/MM_AFNI/AD_post/smwc1pb2194_sinha_stack3d_S002.nii
pb2675 /home/sf674/MM_AFNI/AD_post/smwc1pb2675_sinha_stack3d_S002.nii
pb2861 /home/sf674/MM_AFNI/AD_post/smwc1pb2861_sinha_stack3d_S002.nii
pb3336 /home/sf674/MM_AFNI/AD_post/smwc1pb3336_sinha_stack3d_S002.nii
pb3418 /home/sf674/MM_AFNI/AD_post/smwc1pb3418_sinha_stack3d_S002.nii
pb3434 /home/sf674/MM_AFNI/AD_post/smwc1pb3434_sinha_stack3d_S002.nii
pb4281 /home/sf674/MM_AFNI/AD_post/smwc1pb4281_sinha_stack3d_S002.nii
pb4390 /home/sf674/MM_AFNI/AD_post/smwc1pb4390_sinha_stack3d_S002.nii
pb6827 /home/sf674/MM_AFNI/AD_post/smwc1pb6827_sinha_stack3d_S002.nii
pb7382 /home/sf674/MM_AFNI/AD_post/smwc1pb7382_sinha_stack3d_S002.nii
pb7655 /home/sf674/MM_AFNI/AD_post/smwc1pb7655_sinha_stack3d_S002.nii
pb7954 /home/sf674/MM_AFNI/AD_post/smwc1pb7954_sinha_stack3d_S002.nii
pb8069 /home/sf674/MM_AFNI/AD_post/smwc1pb8069_sinha_stack3d_S002.nii
pb8548 /home/sf674/MM_AFNI/AD_post/smwc1pb8548_sinha_stack3d_S002.nii
pb8726 /home/sf674/MM_AFNI/AD_post/smwc1pb8726_sinha_stack3d_S002.nii
pb9282 /home/sf674/MM_AFNI/AD_post/smwc1pb9282_sinha_stack3d_S002.nii
pb9366 /home/sf674/MM_AFNI/AD_post/smwc1pb9366_sinha_stack3d_S002.nii
pb9716 /home/sf674/MM_AFNI/AD_post/smwc1pb9716_sinha_stack3d_S002.nii
pb9800 /home/sf674/MM_AFNI/AD_post/smwc1pb9800_sinha_stack3d_S002.nii
tb1851 /home/sf674/MM_AFNI/AD_post/smwc1tb1851_sinha_stack3d_S002.nii
tb2146 /home/sf674/MM_AFNI/AD_post/smwc1tb2146_sinha_stack3d_S002.nii
tb2222 /home/sf674/MM_AFNI/AD_post/smwc1tb2222_sinha_stack3d_S002.nii
tb2408 /home/sf674/MM_AFNI/AD_post/smwc1tb2408_sinha_stack3d_S002.nii
tb3246 /home/sf674/MM_AFNI/AD_post/smwc1tb3246_sinha_stack3d_S002.nii
tb3357 /home/sf674/MM_AFNI/AD_post/smwc1tb3357_sinha_stack3d_S002.nii
tb3516 /home/sf674/MM_AFNI/AD_post/smwc1tb3516_sinha_stack3d_S002.nii
tb3891 /home/sf674/MM_AFNI/AD_post/smwc1tb3891_sinha_stack3d_S003.nii
tb3971 /home/sf674/MM_AFNI/AD_post/smwc1tb3971_sinha_stack3d_S002.nii
tb4080 /home/sf674/MM_AFNI/AD_post/smwc1tb4080_sinha_stack3d_S002.nii
tb4278 /home/sf674/MM_AFNI/AD_post/smwc1tb4278_sinha_stack3d_S002.nii
tb4370 /home/sf674/MM_AFNI/AD_post/smwc1tb4370_sinha_stack3d_S002.nii
tb4806 /home/sf674/MM_AFNI/AD_post/smwc1tb4806_sinha_stack3d_S002.nii
tb4922 /home/sf674/MM_AFNI/AD_post/smwc1tb4922_sinha_stack3d_S002.nii
tb4955 /home/sf674/MM_AFNI/AD_post/smwc1tb4955_sinha_stack3d_S002.nii
tb4966 /home/sf674/MM_AFNI/AD_post/smwc1tb4966_sinha_stack3d_S002.nii
tb5043 /home/sf674/MM_AFNI/AD_post/smwc1tb5043_sinha_stack3d_S002.nii
tb5266 /home/sf674/MM_AFNI/AD_post/smwc1tb5266_sinha_stack3d_S002.nii
tb5298 /home/sf674/MM_AFNI/AD_post/smwc1tb5298_sinha_stack3d_S002.nii
tb5323 /home/sf674/MM_AFNI/AD_post/smwc1tb5323_sinha_stack3d_S002.nii
tb5388 /home/sf674/MM_AFNI/AD_post/smwc1tb5388_sinha_stack3d_S002.nii \