[picchionid@cn0032 ~]$ afni --version
Precompiled binary linux_rocky_8: Jul 6 2026 (Version AFNI_26.2.01 'Gordian III')
[picchionid@cn0032 ~]$ R --version
R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
Gang,
Hi! How are you? How are data?!
I am trying to do some interesting analyses with 3dLMEr without fixed effects. Of course, I think they are interesting; I hope you think they are interesting.
First, in preparing to continue to take advantage of its -R2 option, I am trying to run a reduced model so that I can calculate an effect size with Cohen's f^2. The full model is this: -model "1+AAT+(1+AAT|Subj)". The reduced model I am trying is this: 1+(1+AAT|Subj), but it will not run and gives this error:
Error in checkForRemoteErrors(val) :
4 nodes produced errors; first error: replacement has length zero
Calls: aperm ... clusterApply -> staticClusterApply -> checkForRemoteErrors
Execution halted
In this case, I do not need -gltCode because I am only interested in R^2.
Second, I am trying to do an LME equivalent of a single-sample t-test to account for subject clusters by running an intercept-only model: -model '1+(1|Subj)'. When I try, I get the same error. In this case, I would need -gltCode because I need the direction from which the mean is different from zero. I tried a workaround by including a constant factor in -dataTable without success:
...
-model "1+Constant+(1|Subj)" \
-gltCode mean 'Constant : 1*mean' \
...
** Error:
Quitting due to model test failure...
What do you think?
Sincerely,
Dante
Gang
July 10, 2026, 1:20pm
2
What kind of variable is AAT? Quantitative or qualitative? Within- or between-individual?
Gang Chen
Gang,
Hi. It is a quantitative (specified so with -qVars), within-individual variable.
Sincerely,
Dante
Gang
July 11, 2026, 10:22pm
4
The following model is structurally appropriate:
-model "1+AAT+(1+AAT|Subj)"
In contrast, the reduced model:
-model 1+(1+AAT|Subj)
is problematic: the random effects of AAT need to be anchored to a population-level effect as in the first model above.
The model below is fine if at least some individuals have more than than one input file:
-model "1+(1|Subj)"
The following model is not well-constructed because Constant is not a variable in this context:
-model "1+Constant+(1|Subj)"
Gang Chen
Gang,
Interesting. You say the -model "1+(1|Subj)" model is fine; every individual indeed had more than one input file. However, it did not run and gave this
Error in checkForRemoteErrors(val) :
4 nodes produced errors; first error: replacement has length zero
Calls: aperm ... clusterApply -> staticClusterApply -> checkForRemoteErrors
Execution halted
error. See below for the excruciating details.
Sincerely,
Dante
+ 3dLMEr -prefix output_lme_audaro_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs_test4.nii -jobs 32 -model '1+(1|Subj)' '' -R2 -SS_type 3 -dataTable Subj AAT InputFile s00009 0 ../20191122_0005_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00009 5 ../20191122_0103_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00009 0 ../20191122_0219_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00009 0 ../20191122_0249_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00009 5 ../20191122_0506_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00009 0 ../20191122_0530_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00009 0 ../20191122_0550_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00018 5 ../20190530_2255_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00018 10 ../20190531_0100_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00018 20 ../20190531_0143_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00018 5 ../20190531_0200_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00018 20 ../20190531_0212_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00018 5 ../20190531_0308_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00018 10 ../20190531_0432_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00018 15 ../20190531_0546_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00019 10 ../20190905_2300_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00019 10 ../20190906_0035_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00019 15 ../20190906_0338_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00019 0 ../20190906_0430_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00019 0 ../20190906_0452_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00019 5 ../20190906_0502_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00019 30 ../20190906_0514_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00019 35 ../20190906_0635_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00019 0 ../20190906_0659_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00024 5 ../20200130_2239_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00024 0 ../20200130_2339_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00024 0 ../20200131_0240_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00024 5 ../20200131_0327_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00024 0 ../20200131_0338_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00024 0 ../20200131_0354_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00024 0 ../20200131_0407_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00024 0 ../20200131_0543_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00024 0 ../20200131_0603_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00030 15 ../20190502_2328_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00030 10 ../20190503_0023_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00030 35 ../20190503_0048_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00030 15 ../20190503_0111_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00030 20 ../20190503_0339_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00030 15 ../20190503_0440_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00030 10 ../20190503_0508_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00043 10 ../20190822_2316_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00043 15 ../20190823_0100_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00043 35 ../20190823_0234_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00043 5 ../20190823_0345_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00043 45 ../20190823_0514_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00055 55 ../20191219_2257_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00055 0 ../20191219_2326_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00055 0 ../20191220_0006_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00055 20 ../20191220_0032_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00055 5 ../20191220_0113_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00055 0 ../20191220_0339_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00055 0 ../20191220_0425_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00055 0 ../20191220_0453_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00055 5 ../20191220_0650_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00084 35 ../20190627_2300_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00084 40 ../20190627_2353_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00084 5 ../20190628_0020_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00084 25 ../20190628_0300_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00084 10 ../20190628_0345_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00084 5 ../20190628_0410_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00084 20 ../20190628_0521_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00090 40 ../20190926_2255_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00090 15 ../20190926_2326_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00090 5 ../20190927_0030_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00090 10 ../20190927_0214_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00090 0 ../20190927_0308_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00090 0 ../20190927_0423_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00090 20 ../20190927_0523_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00096 0 ../20190808_2240_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00096 0 ../20190808_2303_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00096 5 ../20190809_0035_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00096 30 ../20190809_0224_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00096 0 ../20190809_0335_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00096 0 ../20190809_0405_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00096 0 ../20190809_0430_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00096 5 ../20190809_0508_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00096 0 ../20190809_0642_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00147 0 ../20200213_2238_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00147 5 ../20200213_2330_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00147 0 ../20200214_0013_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00147 35 ../20200214_0108_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00147 5 ../20200214_0154_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00147 0 ../20200214_0405_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00147 0 ../20200214_0454_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00147 0 ../20200214_0610_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00160 15 ../20210225_2341_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00160 5 ../20210226_0020_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00160 55 ../20210226_0111_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00160 5 ../20210226_0140_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00160 5 ../20210226_0508_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00160 0 ../20210226_0528_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00177 50 ../20200116_2305_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00177 20 ../20200117_0023_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00177 5 ../20200117_0043_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00177 20 ../20200117_0137_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00177 30 ../20200117_0211_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00177 40 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../20210604_0722_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00345 5 ../20210819_2245_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00345 20 ../20210819_2352_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00345 10 ../20210820_0131_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00345 10 ../20210820_0208_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00345 15 ../20210820_0224_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00345 5 ../20210820_0321_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00345 5 ../20210820_0408_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00345 10 ../20210820_0433_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00345 5 ../20210820_0530_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00347 15 ../20220203_2300_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00347 40 ../20220204_0105_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00347 5 ../20220204_0245_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00347 5 ../20220204_0309_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00347 5 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../20220513_0045_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00371 65 ../20220513_0120_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00371 10 ../20220513_0200_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00371 20 ../20220513_0217_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00371 20 ../20220513_0445_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00371 10 ../20220513_0448_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00371 0 ../20220513_0610_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00373 10 ../20230119_2240_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00373 5 ../20230120_0043_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00373 0 ../20230120_0244_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00373 0 ../20230120_0344_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00373 0 ../20230120_0420_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00373 5 ../20230120_0429_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00373 0 ../20230120_0538_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00373 0 ../20230120_0617_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00373 0 ../20230120_0710_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00376 40 ../20220303_2304_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00376 10 ../20220303_2317_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00376 15 ../20220303_2329_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00376 20 ../20220304_0120_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00376 20 ../20220304_0222_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00376 0 ../20220304_0233_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00376 0 ../20220304_0420_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00376 0 ../20220304_0610_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00376 10 ../20220304_0630_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00389 25 ../20220317_2302_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00389 30 ../20220318_0004_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00389 40 ../20220318_0017_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00389 25 ../20220318_0035_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00389 40 ../20220318_0406_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00389 5 ../20220318_0703_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00400 65 ../20221020_2230_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00400 30 ../20221020_2322_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00400 10 ../20221021_0138_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00400 50 ../20221021_0150_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00400 15 ../20221021_0332_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00400 50 ../20221021_0421_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00400 50 ../20221021_0450_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00406 10 ../20220428_2235_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00406 25 ../20220428_2306_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00406 25 ../20220428_2320_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00406 25 ../20220428_2356_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00406 5 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../20220722_0312_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00428 10 ../20220722_0336_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00428 10 ../20220722_0433_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00429 50 ../20221222_2300_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00429 35 ../20221222_2343_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00429 20 ../20221223_0133_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00429 30 ../20221223_0231_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00429 5 ../20221223_0243_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00429 5 ../20221223_0447_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00429 10 ../20221223_0500_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00433 0 ../20220811_2234_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00433 25 ../20220811_2249_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00433 10 ../20220811_2338_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00433 10 ../20220811_2358_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00433 0 ../20220812_0110_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00433 5 ../20220812_0421_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00433 5 ../20220812_0600_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00433 0 ../20220812_0630_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00449 25 ../20221103_2235_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00449 35 ../20221103_2253_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00449 5 ../20221104_0004_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00449 10 ../20221104_0047_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00449 25 ../20221104_0425_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00461 5 ../20230202_2240_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00461 10 ../20230202_2340_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00461 10 ../20230203_0100_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00461 15 ../20230203_0148_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00461 5 ../20230203_0301_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00461 5 ../20230203_0444_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00461 0 ../20230203_0632_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00461 0 ../20230203_0642_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00500 25 ../20230316_2305_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00500 20 ../20230316_2350_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00500 20 ../20230317_0022_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00500 35 ../20230317_0034_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00500 10 ../20230317_0135_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00500 0 ../20230317_0232_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00500 0 ../20230317_0423_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00500 20 ../20230317_0502_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00500 25 ../20230317_0540_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00507 10 ../20230216_2240_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00507 10 ../20230216_2303_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00507 5 ../20230217_0037_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00507 10 ../20230217_0117_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00507 5 ../20230217_0127_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00507 0 ../20230217_0332_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00507 10 ../20230217_0434_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00507 5 ../20230217_0537_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00507 0 ../20230217_0545_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00516 5 ../20230330_2250_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00516 20 ../20230330_2305_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00516 10 ../20230331_0015_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00516 5 ../20230331_0055_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00516 35 ../20230331_0218_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00516 15 ../20230331_0451_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00516 30 ../20230331_0602_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00516 5 ../20230331_0640_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00525 30 ../20230831_2335_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00525 5 ../20230901_0059_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00525 5 ../20230901_0132_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00525 10 ../20230901_0314_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00525 10 ../20230901_0536_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00525 0 ../20230901_0641_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00525 0 ../20230901_0709_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00534 50 ../20230728_0037_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00534 50 ../20230728_0146_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00534 60 ../20230728_0203_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00534 60 ../20230728_0316_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00534 60 ../20230728_0505_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00534 55 ../20230728_0548_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00534 60 ../20230728_0646_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00544 5 ../20230420_2255_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00544 5 ../20230420_2306_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00544 0 ../20230420_2319_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00544 0 ../20230420_2329_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00544 5 ../20230420_2349_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00544 10 ../20230421_0002_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00544 10 ../20230421_0128_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00544 25 ../20230421_0200_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00544 5 ../20230421_0648_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00587 10 ../20240118_2240_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00587 15 ../20240118_2333_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00587 20 ../20240119_0028_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00587 25 ../20240119_0050_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00587 0 ../20240119_0455_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00587 20 ../20240119_0536_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00587 0 ../20240119_0655_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00632 0 ../20240229_2240_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00632 0 ../20240229_2355_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00632 0 ../20240301_0055_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00632 0 ../20240301_0108_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00632 0 ../20240301_0138_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00632 10 ../20240301_0328_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00632 0 ../20240301_0445_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00632 0 ../20240301_0500_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00632 0 ../20240301_0607_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00639 20 ../20240201_2235_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00639 5 ../20240201_2307_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00639 20 ../20240202_0017_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00639 5 ../20240202_0044_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00639 45 ../20240202_0208_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00639 5 ../20240202_0305_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00639 5 ../20240202_0326_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00639 10 ../20240202_0515_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00639 5 ../20240202_0550_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00656 5 ../20240613_2250_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00656 0 ../20240613_2345_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00656 0 ../20240614_0030_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00656 0 ../20240614_0150_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00656 10 ../20240614_0246_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00656 0 ../20240614_0321_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00656 0 ../20240614_0400_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00656 5 ../20240614_0506_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00656 5 ../20240614_0635_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00664 0 ../20240328_2235_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00664 5 ../20240328_2253_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00664 0 ../20240328_2335_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00664 15 ../20240329_0130_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00664 0 ../20240329_0235_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00664 5 ../20240329_0555_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00665 15 ../20240509_2245_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00665 5 ../20240510_0104_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00665 45 ../20240510_0238_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00665 20 ../20240510_0311_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00665 10 ../20240510_0337_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00665 10 ../20240510_0527_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii s00665 5 ../20240510_0549_pcc_procbasic_ric_rvt_ppga_tr79_rz_abs.nii
[INFO] Please allocate lscratch for batch/sinteractive R jobs
Dimensions:
rows: 335 | columns: 3
+* Warning: Each "Subj" does not have the same number of "InputFiles"!
Most Subj have 9 InputFiles. The following Subj differ:
Subj NumInputFiles
s00009 7
s00018 8
s00030 7
s00043 5
s00084 7
s00090 7
s00147 8
s00160 6
s00265 7
s00355 7
s00389 6
s00400 7
s00406 6
s00423 7
s00428 8
s00429 7
s00433 8
s00449 5
s00461 8
s00516 8
s00525 7
s00534 7
s00587 7
s00664 6
s00665 7
Data summary:
Variable Detected_Type Details
Subj Subjects Num Subjects=43
AAT Quantitative Min=0 | Max=65 | Num outliers=9
InputFile Data Number of InputFiles=335
++ Good: All InputFiles exist.
++ Good: All InputFiles have exactly 1 volume.
++ Good: All InputFiles are on the same grid.
++++++++++++++++++++++++++++++++++++++++++++++++++++
***** Summary information of data structure *****
335 response values
***** End of data structure information *****
++++++++++++++++++++++++++++++++++++++++++++++++++++
Reading input files now...
Reading input files for effect estimates: Done!
Range of input data: [0.000, 2.011]
If the program hangs here for more than, for example, half an hour,
kill the process because the model specification or something else
is likely inappropriate.
Loading required package: lme4
Loading required package: Matrix
Package lme4 loaded successfully!
Loading required package: lmerTest
Attaching package: ‘lmerTest’
The following object is masked from ‘package:lme4’:
lmer
The following object is masked from ‘package:stats’:
step
Package lmerTest loaded successfully!
Loading required package: phia
Loading required package: car
Loading required package: carData
Package phia loaded successfully!
Loading required package: MuMIn
Package MuMIn loaded successfully!
[1] "Great, test run passed at voxel (26, 31, 25)!"
[1] "Start to compute 75 slices along Z axis. You can monitor the progress"
[1] "and estimate the total run time as shown below."
[1] "07/08/26 14:55:53.509"
Loading required package: snow
Package snow loaded successfully!
Z slice # 1 done: 07/08/26 14:56:01.651
Z slice # 2 done: 07/08/26 14:56:01.779
Z slice # 3 done: 07/08/26 14:56:01.947
Z slice # 4 done: 07/08/26 14:56:02.114
Error in checkForRemoteErrors(val) :
4 nodes produced errors; first error: replacement has length zero
Calls: aperm ... clusterApply -> staticClusterApply -> checkForRemoteErrors
Execution halted
Gang
July 14, 2026, 9:53am
6
Would you be able to share the input files and the 3dLMEr script? Having those would allow me to examine/diagnose the setup more closely.
Gang Chen