3dLMEr for three within factors

qianqian · November 5, 2024, 4:20am

Hi, all AFNI experts~
I would like to ask some questions about ‘3dLMEr’.
Based on the previous query, I chose ‘3dLMEr’ because my experimental design is a three factor within subject design, with each factor having two levels(Action(open,grasp)*Position(left,right)*Size(small,big)).

First question: Am I choosing ‘3dLMEr’ correctly？
Second question: If it is correct, how should I detect the main effects of each factor and the interactions between factors
Here is my simple script, which may have some issues. I really hope that experts can give me some guidance

---------------------- set process variables ----------------------

3dLMEr -prefix 3dLMEr_haptical -jobs 8                                    \
      -mask "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub01.results/mask_group+tlrc"      \
      -model 'Action*Position*Size+(1|Subj)+(1|Action:Subj)+(1|Position:Subj)+(1|Size:Subj)+(1|Size:Position:Subj)+(1|Action:Size:Subj)+(1|Position:Size:Subj)'                                        \
      -bounds  -2 2                                                \
      -SS_type 3                                                   \
      -num_glt 9                                                   \
      -gltLabel 1 'open'   -gltCode  1 'Action : 1*open'                       \
      -gltLabel 2 'grasp'  -gltCode  2 'Action : 1*grasp'                      \
      -gltLabel 3 'left'   -gltCode  3 'Position : 1*left'                       \
      -gltLabel 4 'right'  -gltCode  4 'Position : 1*right'                      \
      -gltLabel 5 'small'  -gltCode  5 'Size : 1*small'                       \
      -gltLabel 6 'big'    -gltCode  6 'Size : 1*big'                      \
      -gltLabel 7 'grasp-open' -gltCode  7 'Action : 1*grasp -1*grasp'      \
      -gltLabel 8 'right-left' -gltCode  8 'Position : 1*right -1*left'      \
      -gltLabel 9 'big-small' -gltCode  9 'Size : 1*big -1*small'      \
      -num_glf 16                                                   \
      -glfLabel 1  'Action_left'      -glfCode  1  'Action : 1*grasp -1*open Position : 1*left'      \
      -glfLabel 2  'Action_right'     -glfCode  2  'Action : 1*grasp -1*open Position : 1*right'      \
      -glfLabel 3  'Action_small'     -glfCode  3  'Action : 1*grasp -1*open Size : 1*small'      \
      -glfLabel 4  'Action_big'       -glfCode  4  'Action : 1*grasp -1*open Size : 1*big'      \
      -glfLabel 5  'Position_open'    -glfCode  5  'Position : 1*right -1*left Action : 1*open'      \
      -glfLabel 6  'Position__grasp'  -glfCode  6  'Position : 1*right -1*left Action : 1*grasp'      \
      -glfLabel 7  'Position__small'  -glfCode  7  'Position : 1*right -1*left Size : 1*small'      \
      -glfLabel 8  'Position__big'    -glfCode  8  'Position : 1*right -1*left Size : 1*big'      \
      -glfLabel 9  'Size_open'        -glfCode  9  'Size : 1*big -1*small Action : 1*open'      \
      -glfLabel 10 'Size_grasp'       -glfCode  10 'Size : 1*big -1*small Action : 1*grasp'      \
      -glfLabel 11 'Size_left'        -glfCode  11 'Size : 1*big -1*small Position : 1*left'      \
      -glfLabel 12 'Size_right'       -glfCode  12 'Size : 1*big -1*small Position : 1*right'      \
      -glfLabel 13 'Action_Position'  -glfCode  13  'Action : 1*grasp -1*open Position : 1*right -1*left'      \
      -glfLabel 14 'Action_Size'      -glfCode  14  'Action : 1*grasp -1*open Size : 1*big -1*small'      \
      -glfLabel 15 'Position_Size'    -glfCode  15  'Position : 1*right -1*left Size : 1*big -1*small'      \
      -glfLabel 16  'Action_Position_Size'       -glfCode  16  'Action : 1*grasp -1*open Position : 1*right -1*left Size : 1*big -1*small'      \
      -dataTable                                                  \
      Subj  Action      Position    Size     InputFile                      \
      s1    open        left        small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub01.results/stats.sub01_REML+tlrc[1]"              \
      s1    open        left        big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub01.results/stats.sub01_REML+tlrc[7]"              \
      s1    open        right       small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub01.results/stats.sub01_REML+tlrc[4]"              \
      s1    open        right       big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub01.results/stats.sub01_REML+tlrc[10]"              \
      s1    grasp       left        small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub01.results/stats.sub01_REML+tlrc[13]"              \
      s1    grasp       left        big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub01.results/stats.sub01_REML+tlrc[19]"              \
      s1    grasp       right       small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub01.results/stats.sub01_REML+tlrc[16]"              \
      s1    grasp       right       big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub01.results/stats.sub01_REML+tlrc[22]"              \
      s2    open        left        small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub02.results/stats.sub02_REML+tlrc[1]"              \
      s2    open        left        big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub02.results/stats.sub02_REML+tlrc[7]"              \
      s2    open        right       small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub02.results/stats.sub02_REML+tlrc[4]"              \
      s2    open        right       big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub02.results/stats.sub02_REML+tlrc[10]"              \
      s2    grasp       left        small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub02.results/stats.sub02_REML+tlrc[13]"              \
      s2    grasp       left        big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub02.results/stats.sub02_REML+tlrc[19]"              \
      s2    grasp       right       small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub02.results/stats.sub02_REML+tlrc[16]"              \
      s2    grasp       right       big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub02.results/stats.sub02_REML+tlrc[22]"              \
      s3    open        left        small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub03.results/stats.sub03_REML+tlrc[1]"              \
      s3    open        left        big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub03.results/stats.sub03_REML+tlrc[7]"              \
      s3    open        right       small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub03.results/stats.sub03_REML+tlrc[4]"              \
      s3    open        right       big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub03.results/stats.sub03_REML+tlrc[10]"              \
      s3    grasp       left        small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub03.results/stats.sub03_REML+tlrc[13]"              \
      s3    grasp       left        big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub03.results/stats.sub03_REML+tlrc[19]"              \
      s3    grasp       right       small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub03.results/stats.sub03_REML+tlrc[16]"              \
      s3    grasp       right       big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub03.results/stats.sub03_REML+tlrc[22]"              \
      s4    open        left        small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub04.results/stats.sub04_REML+tlrc[1]"              \
      s4    open        left        big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub04.results/stats.sub04_REML+tlrc[7]"              \
      s4    open        right       small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub04.results/stats.sub04_REML+tlrc[4]"              \
      s4    open        right       big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub04.results/stats.sub04_REML+tlrc[10]"              \
      s4    grasp       left        small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub04.results/stats.sub04_REML+tlrc[13]"              \
      s4    grasp       left        big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub04.results/stats.sub04_REML+tlrc[19]"              \
      s4    grasp       right       small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub04.results/stats.sub04_REML+tlrc[16]"              \
      s4    grasp       right       big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub04.results/stats.sub04_REML+tlrc[22]"              \
      s5    open        left        small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub05.results/stats.sub05_REML+tlrc[1]"              \
      s5    open        left        big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub05.results/stats.sub05_REML+tlrc[7]"              \
      s5    open        right       small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub05.results/stats.sub05_REML+tlrc[4]"              \
      s5    open        right       big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub05.results/stats.sub05_REML+tlrc[10]"              \
      s5    grasp       left        small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub05.results/stats.sub05_REML+tlrc[13]"              \
      s5    grasp       left        big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub05.results/stats.sub05_REML+tlrc[19]"              \
      s5    grasp       right       small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub05.results/stats.sub05_REML+tlrc[16]"              \
      s5    grasp       right       big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub05.results/stats.sub05_REML+tlrc[22]"              \
      s6    open        left        small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub06.results/stats.sub06_REML+tlrc[1]"              \
      s6    open        left        big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub06.results/stats.sub06_REML+tlrc[7]"              \
      s6    open        right       small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub06.results/stats.sub06_REML+tlrc[4]"              \
      s6    open        right       big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub06.results/stats.sub06_REML+tlrc[10]"              \
      s6    grasp       left        small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub06.results/stats.sub06_REML+tlrc[13]"              \
      s6    grasp       left        big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub06.results/stats.sub06_REML+tlrc[19]"              \
      s6    grasp       right       small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub06.results/stats.sub06_REML+tlrc[16]"              \
      s6    grasp       right       big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub06.results/stats.sub06_REML+tlrc[22]"              \
      s7    open        left        small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub07.results/stats.sub07_REML+tlrc[1]"              \
      s7    open        left        big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub07.results/stats.sub07_REML+tlrc[7]"              \
      s7    open        right       small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub07.results/stats.sub07_REML+tlrc[4]"              \
      s7    open        right       big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub07.results/stats.sub07_REML+tlrc[10]"              \
      s7    grasp       left        small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub07.results/stats.sub07_REML+tlrc[13]"              \
      s7    grasp       left        big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub07.results/stats.sub07_REML+tlrc[19]"              \
      s7    grasp       right       small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub07.results/stats.sub07_REML+tlrc[16]"              \
      s7    grasp       right       big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub07.results/stats.sub07_REML+tlrc[22]"              \
      s8    open        left        small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub08.results/stats.sub08_REML+tlrc[1]"              \
      s8    open        left        big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub08.results/stats.sub08_REML+tlrc[7]"              \
      s8    open        right       small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub08.results/stats.sub08_REML+tlrc[4]"              \
      s8    open        right       big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub08.results/stats.sub08_REML+tlrc[10]"              \
      s8    grasp       left        small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub08.results/stats.sub08_REML+tlrc[13]"              \
      s8    grasp       left        big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub08.results/stats.sub08_REML+tlrc[19]"              \
      s8    grasp       right       small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub08.results/stats.sub08_REML+tlrc[16]"              \
      s8    grasp       right       big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub08.results/stats.sub08_REML+tlrc[22]"              \
      s9    open        left        small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub09.results/stats.sub09_REML+tlrc[1]"              \
      s9    open        left        big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub09.results/stats.sub09_REML+tlrc[7]"              \
      s9    open        right       small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub09.results/stats.sub09_REML+tlrc[4]"              \
      s9    open        right       big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub09.results/stats.sub09_REML+tlrc[10]"              \
      s9    grasp       left        small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub09.results/stats.sub09_REML+tlrc[13]"              \
      s9    grasp       left        big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub09.results/stats.sub09_REML+tlrc[19]"              \
      s9    grasp       right       small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub09.results/stats.sub09_REML+tlrc[16]"              \
      s9    grasp       right       big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub09.results/stats.sub09_REML+tlrc[22]"              \
      s10   open        left        small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub10.results/stats.sub10_REML+tlrc[1]"              \
      s10   open        left        big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub10.results/stats.sub10_REML+tlrc[7]"              \
      s10   open        right       small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub10.results/stats.sub10_REML+tlrc[4]"              \
      s10   open        right       big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub10.results/stats.sub10_REML+tlrc[10]"              \
      s10   grasp       left        small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub10.results/stats.sub10_REML+tlrc[13]"              \
      s10   grasp       left        big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub10.results/stats.sub10_REML+tlrc[19]"              \
      s10   grasp       right       small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub10.results/stats.sub10_REML+tlrc[16]"              \
      s10   grasp       right       big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub10.results/stats.sub10_REML+tlrc[22]"              \
      s11   open        left        small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub11.results/stats.sub11_REML+tlrc[1]"              \
      s11   open        left        big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub11.results/stats.sub11_REML+tlrc[7]"              \
      s11   open        right       small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub11.results/stats.sub11_REML+tlrc[4]"              \
      s11   open        right       big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub11.results/stats.sub11_REML+tlrc[10]"              \
      s11   grasp       left        small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub11.results/stats.sub11_REML+tlrc[13]"              \
      s11   grasp       left        big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub11.results/stats.sub11_REML+tlrc[19]"              \
      s11   grasp       right       small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub11.results/stats.sub11_REML+tlrc[16]"              \
      s11   grasp       right       big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub11.results/stats.sub11_REML+tlrc[22]"              \
      s12   open        left        small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub12.results/stats.sub12_REML+tlrc[1]"              \
      s12   open        left        big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub12.results/stats.sub12_REML+tlrc[7]"              \
      s12   open        right       small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub12.results/stats.sub12_REML+tlrc[4]"              \
      s12   open        right       big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub12.results/stats.sub12_REML+tlrc[10]"              \
      s12   grasp       left        small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub12.results/stats.sub12_REML+tlrc[13]"              \
      s12   grasp       left        big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub12.results/stats.sub12_REML+tlrc[19]"              \
      s12   grasp       right       small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub12.results/stats.sub12_REML+tlrc[16]"              \
      s12   grasp       right       big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub12.results/stats.sub12_REML+tlrc[22]"              \
      s13   open        left        small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub13.results/stats.sub13_REML+tlrc[1]"              \
      s13   open        left        big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub13.results/stats.sub13_REML+tlrc[7]"              \
      s13   open        right       small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub13.results/stats.sub13_REML+tlrc[4]"              \
      s13   open        right       big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub13.results/stats.sub13_REML+tlrc[10]"              \
      s13   grasp       left        small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub13.results/stats.sub13_REML+tlrc[13]"              \
      s13   grasp       left        big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub13.results/stats.sub13_REML+tlrc[19]"              \
      s13   grasp       right       small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub13.results/stats.sub13_REML+tlrc[16]"              \
      s13   grasp       right       big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub13.results/stats.sub13_REML+tlrc[22]"              \
      s14   open        left        small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub14.results/stats.sub14_REML+tlrc[1]"              \
      s14   open        left        big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub14.results/stats.sub14_REML+tlrc[7]"              \
      s14   open        right       small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub14.results/stats.sub14_REML+tlrc[4]"              \
      s14   open        right       big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub14.results/stats.sub14_REML+tlrc[10]"              \
      s14   grasp       left        small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub14.results/stats.sub14_REML+tlrc[13]"              \
      s14   grasp       left        big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub14.results/stats.sub14_REML+tlrc[19]"              \
      s14   grasp       right       small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub14.results/stats.sub14_REML+tlrc[16]"              \
      s14   grasp       right       big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub14.results/stats.sub14_REML+tlrc[22]"              \
      s15   open        left        small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub15.results/stats.sub15_REML+tlrc[1]"              \
      s15   open        left        big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub15.results/stats.sub15_REML+tlrc[7]"              \
      s15   open        right       small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub15.results/stats.sub15_REML+tlrc[4]"              \
      s15   open        right       big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub15.results/stats.sub15_REML+tlrc[10]"              \
      s15   grasp       left        small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub15.results/stats.sub15_REML+tlrc[13]"              \
      s15   grasp       left        big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub15.results/stats.sub15_REML+tlrc[19]"              \
      s15   grasp       right       small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub15.results/stats.sub15_REML+tlrc[16]"              \
      s15   grasp       right       big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub15.results/stats.sub15_REML+tlrc[22]"              \
      s16   open        left        small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub16.results/stats.sub16_REML+tlrc[1]"              \
      s16   open        left        big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub16.results/stats.sub16_REML+tlrc[7]"              \
      s16   open        right       small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub16.results/stats.sub16_REML+tlrc[4]"              \
      s16   open        right       big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub16.results/stats.sub16_REML+tlrc[10]"              \
      s16   grasp       left        small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub16.results/stats.sub16_REML+tlrc[13]"              \
      s16   grasp       left        big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub16.results/stats.sub16_REML+tlrc[19]"              \
      s16   grasp       right       small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub16.results/stats.sub16_REML+tlrc[16]"              \
      s16   grasp       right       big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub16.results/stats.sub16_REML+tlrc[22]"              \
      s17   open        left        small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub17.results/stats.sub17_REML+tlrc[1]"              \
      s17   open        left        big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub17.results/stats.sub17_REML+tlrc[7]"              \
      s17   open        right       small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub17.results/stats.sub17_REML+tlrc[4]"              \
      s17   open        right       big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub17.results/stats.sub17_REML+tlrc[10]"              \
      s17   grasp       left        small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub17.results/stats.sub17_REML+tlrc[13]"              \
      s17   grasp       left        big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub17.results/stats.sub17_REML+tlrc[19]"              \
      s17   grasp       right       small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub17.results/stats.sub17_REML+tlrc[16]"              \
      s17   grasp       right       big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub17.results/stats.sub17_REML+tlrc[22]"              \
      s18   open        left        small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub18.results/stats.sub18_REML+tlrc[1]"              \
      s18   open        left        big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub18.results/stats.sub18_REML+tlrc[7]"              \
      s18   open        right       small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub18.results/stats.sub18_REML+tlrc[4]"              \
      s18   open        right       big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub18.results/stats.sub18_REML+tlrc[10]"              \
      s18   grasp       left        small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub18.results/stats.sub18_REML+tlrc[13]"              \
      s18   grasp       left        big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub18.results/stats.sub18_REML+tlrc[19]"              \
      s18   grasp       right       small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub18.results/stats.sub18_REML+tlrc[16]"              \
      s18   grasp       right       big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub18.results/stats.sub18_REML+tlrc[22]"              \
      s19   open        left        small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub19.results/stats.sub19_REML+tlrc[1]"              \
      s19   open        left        big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub19.results/stats.sub19_REML+tlrc[7]"              \
      s19   open        right       small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub19.results/stats.sub19_REML+tlrc[4]"              \
      s19   open        right       big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub19.results/stats.sub19_REML+tlrc[10]"              \
      s19   grasp       left        small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub19.results/stats.sub19_REML+tlrc[13]"              \
      s19   grasp       left        big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub19.results/stats.sub19_REML+tlrc[19]"              \
      s19   grasp       right       small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub19.results/stats.sub19_REML+tlrc[16]"              \
      s19   grasp       right       big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub19.results/stats.sub19_REML+tlrc[22]"              \
      s20   open        left        small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub20.results/stats.sub20_REML+tlrc[1]"              \
      s20   open        left        big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub20.results/stats.sub20_REML+tlrc[7]"              \
      s20   open        right       small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub20.results/stats.sub20_REML+tlrc[4]"              \
      s20   open        right       big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub20.results/stats.sub20_REML+tlrc[10]"              \
      s20   grasp       left        small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub20.results/stats.sub20_REML+tlrc[13]"              \
      s20   grasp       left        big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub20.results/stats.sub20_REML+tlrc[19]"              \
      s20   grasp       right       small    "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub20.results/stats.sub20_REML+tlrc[16]"              \
      s20   grasp       right       big      "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub20.results/stats.sub20_REML+tlrc[22]"              \

Are "gltCodes" correct? I followed the tutorial and made changes to see the main effects and interactions, but I'm still not sure how to handle it, so I really hope to get your help. Thank you very much

qianqian · November 5, 2024, 8:39am

When I run the above script, these prompts appeared
** Error:
Expecting 2 parameters for option "-bounds".
Have 9 parameter(s) in string "-2 2 -SS_type 3 -num_glt 9 -gltLabel 1 open" instead.
NOTE that -SS_type in bad option above is not a recognized option.

** Error:
Error parsing arguments. See 3dLMEr -help for details.
Warning messages:
1: In is.null(ss) || !length(ss) || ss == "" :
'length(x) = 9 > 1' in coercion to 'logical(1)'
2: In is.null(ss) || !length(ss) || ss == "" :
'length(x) = 805 > 1' in coercion to 'logical(1)'

Gang · November 5, 2024, 4:55pm

Your model specification looks reasonable to me. The error may be due to an extra space at the end of this line:

-gltLabel 1 'open'   -gltCode 1 'Action : 1*open'                 \

There could also be extra spaces on other lines with -gltLabel and -glfLabel.

More importantly, options -num_glt, -num_gltf, -gltLabel, and -glfLabel are not valid in 3dLMEr. Refer to the 3dLMEr help documentation for guidance on specifying post hoc tests. Any lines using -glfCode can be replaced with -gltCode in your case.

Lastly, ensure that the bound values of -2 and 2 are suitable for your input data.

Gang Chen

qianqian · November 6, 2024, 12:32pm

Hi Gang
Thank you very much for your reply, it helped me a lot !!!
Now I'm facing some minor issues

When I run 3dLMEr, such a prompt appears
"** Error:
Expecting 1 parameters for option "-model".
Have 3 parameter(s) in string "ActionPositionSize+(1|Subj)+(1|Action:Subj)+(1|Position:Subj)+(1|Size:Subj)+(1|Size:Position:Subj)+(1|Action:Size:Subj)+(1|Position:Size:Subj) -SS_type 3" instead.
NOTE that -SS_type in bad option above is not a recognized option.
"

3dLMEr  -prefix 3dLMEr_haptical -jobs 8                                    \
          -mask "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub01.results/mask_group+tlrc"      \
          -model 'Action*Position*Size+(1|Subj)+(1|Action:Subj)+(1|Position:Subj)+(1|Size:Subj)+(1|Size:Position:Subj)+(1|Action:Size:Subj)+(1|Position:Size:Subj)' \
          -SS_type  3                        \
          -bounds   -2 2                      \

I am quite sure that there is no more space after "(1|Position:Size:Subj) ", I browsed some of the issues on the forum, probably because my afni version needs to be updated, and it is being updated now, hoping to have a good result tomorrow

According to your paper ( Chen, G., Saad, Z.S., Britton, J.C., Pine, D.S., & Cox, R.W. (2013). Linear mixed-effects modeling approach to FMRI group analysis. NeuroImage, 73 , 176-190.), it says: Post hoc pairwise contrasts between two levels of a categorical variable can be obtained through direct estimation through dummy coding with a reference level, but are practically tested through package contrast (Kuhn, 2011) with conditional t-statistics,
I didn't find any other help with Post-hoc test after 3dLMEr other than above, so I want to ask what I should do after installing this package in R? Maybe there is a better tutorial that can help me?
Thanks for u help
Qianqian Wu

Gang · November 7, 2024, 1:34am

Qianqian,

Did updating AFNI resolve the error with the -SS_type option? For specifying post hoc testing in 3dLMEr, you can refer to the examples in 3dLMEr -help or check out the online documentation here.

Gang Chen

qianqian · November 7, 2024, 12:07pm

Yes, this one was resolved .
When I run new 3dLMEr, such a prompt appeared
Error in [.data.frame(dataStr, , vars[ii]) : undefined columns selected
Calls: process.LME.opts ... gl_Constr -> glfConstr -> levels -> [ -> [.data.frame
Execution halted
Could this mean that when using a data frame in R, a column that doesn't exist was selected?
I've changed the format of the dataTable, and now there should be no more empty columns, how can I fix it?
Here's my new script

    #!/bin/tcsh -xef
# ---------------------- set process variables ----------------------
3dLMEr -prefix 3dLMEr_haptical \
    -jobs 8 \
    -mask "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub01.results/mask_group+tlrc" \
    -model 'Action*Position*Size+(1|Subj)+(1|Action:Subj)+(1|Position:Subj)+(1|Size:Subj)+(1|Size:Position:Subj)+(1|Action:Size:Subj)+(1|Position:Size:Subj)' \
    -SS_type 3 \
    -bounds -2 2 \
    -gltCode open 'Action: 1*open' \
    -gltCode grasp 'Action: 1*grasp' \
    -gltCode left 'Position: 1*left' \
    -gltCode right 'Position: 1*right' \
    -gltCode small 'Size: 1*small' \
    -gltCode big 'Size: 1*big' \
    -gltCode grasp-open 'Action: 1*grasp -1*grasp' \
    -gltCode right-left 'Position: 1*right -1*left' \
    -gltCode big-small 'Size: 1*big -1*small' \
    -gltCode Action_left 'Action: 1*grasp -1*open Position: 1*left' \
    -gltCode Action_right 'Action: 1*grasp -1*open Position: 1*right' \
    -gltCode Action_small 'Action: 1*grasp -1*open Size: 1*small' \
    -gltCode Action_big 'Action: 1*grasp -1*open Size: 1*big' \
    -gltCode Position_open 'Position: 1*right -1*left Action: 1*open' \
    -gltCode Position_grasp 'Position: 1*right -1*left Action: 1*grasp' \
    -gltCode Position_small 'Position: 1*right -1*left Size: 1*small' \
    -gltCode Position_big 'Position: 1*right -1*left Size: 1*big' \
    -gltCode Size_open 'Size: 1*big -1*small Action: 1*open' \
    -gltCode Size_grasp 'Size: 1*big -1*small Action: 1*grasp' \
    -gltCode Size_left 'Size: 1*big -1*small Position: 1*left' \
    -gltCode Size_right 'Size: 1*big -1*small Position: 1*right' \
    -gltCode Action_Position 'Action: 1*grasp -1*open Position: 1*right -1*left' \
    -gltCode Action_Size 'Action: 1*grasp -1*open Size: 1*big -1*small' \
    -gltCode Position_Size 'Position: 1*right -1*left Size: 1*big -1*small' \
    -gltCode Action_Position_Size 'Action: 1*grasp -1*open Position: 1*right -1*left Size: 1*big -1*small' \
    -dataTable                                                  \
    Subj Action Position Size InputFile \
s1 open left small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub01.results/stats.sub01_REML+tlrc[1]" \ 
s1 open left big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub01.results/stats.sub01_REML+tlrc[7]" \
s1 open right small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub01.results/stats.sub01_REML+tlrc[4]" \
s1 open right big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub01.results/stats.sub01_REML+tlrc[10]" \
s1 grasp left small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub01.results/stats.sub01_REML+tlrc[13]" \
s1 grasp left big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub01.results/stats.sub01_REML+tlrc[19]" \
s1 grasp right small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub01.results/stats.sub01_REML+tlrc[16]" \
s1 grasp right big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub01.results/stats.sub01_REML+tlrc[22]" \
s2 open left small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub02.results/stats.sub02_REML+tlrc[1]" \
s2 open left big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub02.results/stats.sub02_REML+tlrc[7]" \
s2 open right small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub02.results/stats.sub02_REML+tlrc[4]" \
s2 open right big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub02.results/stats.sub02_REML+tlrc[10]" \
s2 grasp left small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub02.results/stats.sub02_REML+tlrc[13]" \
s2 grasp left big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub02.results/stats.sub02_REML+tlrc[19]" \
s2 grasp right small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub02.results/stats.sub02_REML+tlrc[16]" \
s2 grasp right big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub02.results/stats.sub02_REML+tlrc[22]" \
s3 open left small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub03.results/stats.sub03_REML+tlrc[1]" \
s3 open left big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub03.results/stats.sub03_REML+tlrc[7]" \
s3 open right small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub03.results/stats.sub03_REML+tlrc[4]" \
s3 open right big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub03.results/stats.sub03_REML+tlrc[10]" \
s3 grasp left small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub03.results/stats.sub03_REML+tlrc[13]" \
s3 grasp left big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub03.results/stats.sub03_REML+tlrc[19]" \
s3 grasp right small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub03.results/stats.sub03_REML+tlrc[16]" \
s3 grasp right big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub03.results/stats.sub03_REML+tlrc[22]" \
s4 open left small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub04.results/stats.sub04_REML+tlrc[1]" \
s4 open left big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub04.results/stats.sub04_REML+tlrc[7]" \
s4 open right small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub04.results/stats.sub04_REML+tlrc[4]" \
s4 open right big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub04.results/stats.sub04_REML+tlrc[10]" \
s4 grasp left small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub04.results/stats.sub04_REML+tlrc[13]" \
s4 grasp left big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub04.results/stats.sub04_REML+tlrc[19]" \
s4 grasp right small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub04.results/stats.sub04_REML+tlrc[16]" \
s4 grasp right big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub04.results/stats.sub04_REML+tlrc[22]" \
s5 open left small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub05.results/stats.sub05_REML+tlrc[1]" \
s5 open left big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub05.results/stats.sub05_REML+tlrc[7]" \
s5 open right small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub05.results/stats.sub05_REML+tlrc[4]" \
s5 open right big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub05.results/stats.sub05_REML+tlrc[10]" \
s5 grasp left small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub05.results/stats.sub05_REML+tlrc[13]" \
s5 grasp left big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub05.results/stats.sub05_REML+tlrc[19]" \
s5 grasp right small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub05.results/stats.sub05_REML+tlrc[16]" \
s5 grasp right big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub05.results/stats.sub05_REML+tlrc[22]" \
s6 open left small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub06.results/stats.sub06_REML+tlrc[1]" \
s6 open left big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub06.results/stats.sub06_REML+tlrc[7]" \
s6 open right small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub06.results/stats.sub06_REML+tlrc[4]" \
s6 open right big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub06.results/stats.sub06_REML+tlrc[10]" \
s6 grasp left small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub06.results/stats.sub06_REML+tlrc[13]" \
s6 grasp left big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub06.results/stats.sub06_REML+tlrc[19]" \
s6 grasp right small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub06.results/stats.sub06_REML+tlrc[16]" \
s6 grasp right big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub06.results/stats.sub06_REML+tlrc[22]" \
s7 open left small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub07.results/stats.sub07_REML+tlrc[1]" \
s7 open left big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub07.results/stats.sub07_REML+tlrc[7]" \
s7 open right small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub07.results/stats.sub07_REML+tlrc[4]" \
s7 open right big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub07.results/stats.sub07_REML+tlrc[10]" \
s7 grasp left small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub07.results/stats.sub07_REML+tlrc[13]" \
s7 grasp left big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub07.results/stats.sub07_REML+tlrc[19]" \
s7 grasp right small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub07.results/stats.sub07_REML+tlrc[16]" \
s7 grasp right big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub07.results/stats.sub07_REML+tlrc[22]" \
s8 open left small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub08.results/stats.sub08_REML+tlrc[1]" \
s8 open left big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub08.results/stats.sub08_REML+tlrc[7]" \
s8 open right small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub08.results/stats.sub08_REML+tlrc[4]" \
s8 open right big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub08.results/stats.sub08_REML+tlrc[10]" \
s8 grasp left small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub08.results/stats.sub08_REML+tlrc[13]" \
s8 grasp left big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub08.results/stats.sub08_REML+tlrc[19]" \
s8 grasp right small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub08.results/stats.sub08_REML+tlrc[16]" \
s8 grasp right big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub08.results/stats.sub08_REML+tlrc[22]" \
s9 open left small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub09.results/stats.sub09_REML+tlrc[1]" \
s9 open left big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub09.results/stats.sub09_REML+tlrc[7]" \
s9 open right small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub09.results/stats.sub09_REML+tlrc[4]" \
s9 open right big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub09.results/stats.sub09_REML+tlrc[10]" \
s9 grasp left small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub09.results/stats.sub09_REML+tlrc[13]" \
s9 grasp left big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub09.results/stats.sub09_REML+tlrc[19]" \
s9 grasp right small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub09.results/stats.sub09_REML+tlrc[16]" \
s9 grasp right big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub09.results/stats.sub09_REML+tlrc[22]" \
s10 open left small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub10.results/stats.sub10_REML+tlrc[1]" \
s10 open left big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub10.results/stats.sub10_REML+tlrc[7]" \
s10 open right small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub10.results/stats.sub10_REML+tlrc[4]" \
s10 open right big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub10.results/stats.sub10_REML+tlrc[10]" \
s10 grasp left small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub10.results/stats.sub10_REML+tlrc[13]" \
s10 grasp left big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub10.results/stats.sub10_REML+tlrc[19]" \
s10 grasp right small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub10.results/stats.sub10_REML+tlrc[16]" \
s10 grasp right big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub10.results/stats.sub10_REML+tlrc[22]" \
s11 open left small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub11.results/stats.sub11_REML+tlrc[1]" \
s11 open left big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub11.results/stats.sub11_REML+tlrc[7]" \
s11 open right small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub11.results/stats.sub11_REML+tlrc[4]" \
s11 open right big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub11.results/stats.sub11_REML+tlrc[10]" \
s11 grasp left small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub11.results/stats.sub11_REML+tlrc[13]" \
s11 grasp left big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub11.results/stats.sub11_REML+tlrc[19]" \
s11 grasp right small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub11.results/stats.sub11_REML+tlrc[16]" \
s11 grasp right big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub11.results/stats.sub11_REML+tlrc[22]" \
s12 open left small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub12.results/stats.sub12_REML+tlrc[1]" \
s12 open left big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub12.results/stats.sub12_REML+tlrc[7]" \
s12 open right small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub12.results/stats.sub12_REML+tlrc[4]" \
s12 open right big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub12.results/stats.sub12_REML+tlrc[10]" \
s12 grasp left small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub12.results/stats.sub12_REML+tlrc[13]" \
s12 grasp left big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub12.results/stats.sub12_REML+tlrc[19]" \
s12 grasp right small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub12.results/stats.sub12_REML+tlrc[16]" \
s12 grasp right big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub12.results/stats.sub12_REML+tlrc[22]" \
s13 open left small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub13.results/stats.sub13_REML+tlrc[1]" \
s13 open left big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub13.results/stats.sub13_REML+tlrc[7]" \
s13 open right small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub13.results/stats.sub13_REML+tlrc[4]" \
s13 open right big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub13.results/stats.sub13_REML+tlrc[10]" \
s13 grasp left small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub13.results/stats.sub13_REML+tlrc[13]" \
s13 grasp left big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub13.results/stats.sub13_REML+tlrc[19]" \
s13 grasp right small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub13.results/stats.sub13_REML+tlrc[16]" \
s13 grasp right big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub13.results/stats.sub13_REML+tlrc[22]" \
s14 open left small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub14.results/stats.sub14_REML+tlrc[1]" \
s14 open left big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub14.results/stats.sub14_REML+tlrc[7]" \
s14 open right small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub14.results/stats.sub14_REML+tlrc[4]" \
s14 open right big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub14.results/stats.sub14_REML+tlrc[10]" \
s14 grasp left small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub14.results/stats.sub14_REML+tlrc[13]" \
s14 grasp left big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub14.results/stats.sub14_REML+tlrc[19]" \
s14 grasp right small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub14.results/stats.sub14_REML+tlrc[16]" \
s14 grasp right big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub14.results/stats.sub14_REML+tlrc[22]" \
s15 open left small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub15.results/stats.sub15_REML+tlrc[1]" \
s15 open left big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub15.results/stats.sub15_REML+tlrc[7]" \
s15 open right small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub15.results/stats.sub15_REML+tlrc[4]" \
s15 open right big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub15.results/stats.sub15_REML+tlrc[10]" \
s15 grasp left small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub15.results/stats.sub15_REML+tlrc[13]" \
s15 grasp left big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub15.results/stats.sub15_REML+tlrc[19]" \
s15 grasp right small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub15.results/stats.sub15_REML+tlrc[16]" \
s15 grasp right big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub15.results/stats.sub15_REML+tlrc[22]" \
s16 open left small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub16.results/stats.sub16_REML+tlrc[1]" \
s16 open left big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub16.results/stats.sub16_REML+tlrc[7]" \
s16 open right small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub16.results/stats.sub16_REML+tlrc[4]" \
s16 open right big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub16.results/stats.sub16_REML+tlrc[10]" \
s16 grasp left small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub16.results/stats.sub16_REML+tlrc[13]" \
s16 grasp left big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub16.results/stats.sub16_REML+tlrc[19]" \
s16 grasp right small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub16.results/stats.sub16_REML+tlrc[16]" \
s16 grasp right big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub16.results/stats.sub16_REML+tlrc[22]" \
s17 open left small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub17.results/stats.sub17_REML+tlrc[1]" \
s17 open left big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub17.results/stats.sub17_REML+tlrc[7]" \
s17 open right small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub17.results/stats.sub17_REML+tlrc[4]" \
s17 open right big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub17.results/stats.sub17_REML+tlrc[10]" \
s17 grasp left small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub17.results/stats.sub17_REML+tlrc[13]" \
s17 grasp left big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub17.results/stats.sub17_REML+tlrc[19]" \
s17 grasp right small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub17.results/stats.sub17_REML+tlrc[16]" \
s17 grasp right big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub17.results/stats.sub17_REML+tlrc[22]" \
s18 open left small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub18.results/stats.sub18_REML+tlrc[1]" \
s18 open left big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub18.results/stats.sub18_REML+tlrc[7]" \
s18 open right small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub18.results/stats.sub18_REML+tlrc[4]" \
s18 open right big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub18.results/stats.sub18_REML+tlrc[10]" \
s18 grasp left small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub18.results/stats.sub18_REML+tlrc[13]" \
s18 grasp left big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub18.results/stats.sub18_REML+tlrc[19]" \
s18 grasp right small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub18.results/stats.sub18_REML+tlrc[16]" \
s18 grasp right big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub18.results/stats.sub18_REML+tlrc[22]" \
s19 open left small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub19.results/stats.sub19_REML+tlrc[1]" \
s19 open left big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub19.results/stats.sub19_REML+tlrc[7]" \
s19 open right small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub19.results/stats.sub19_REML+tlrc[4]" \
s19 open right big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub19.results/stats.sub19_REML+tlrc[10]" \
s19 grasp left small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub19.results/stats.sub19_REML+tlrc[13]" \
s19 grasp left big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub19.results/stats.sub19_REML+tlrc[19]" \
s19 grasp right small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub19.results/stats.sub19_REML+tlrc[16]" \
s19 grasp right big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub19.results/stats.sub19_REML+tlrc[22]" \
s20 open left small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub20.results/stats.sub20_REML+tlrc[1]" \
s20 open left big " /media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub20.results/stats.sub20_REML+tlrc[7]" \
s20 open right small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub20.results/stats.sub20_REML+tlrc[4]" \
s20 open right big "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub20.results/stats.sub20_REML+tlrc[10]" \
s20 grasp left small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub20.results/stats.sub20_REML+tlrc[13]" \
s20 grasp left big "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub20.results/stats.sub20_REML+tlrc[19]" \
s20 grasp right small "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub20.results/stats.sub20_REML+tlrc[16]" \
s20 grasp right big "/media/linux/CJ/WXQ_HAPTICAL/analy/results_blur/sub20.results/stats.sub20_REML+tlrc[22]"

I have read this documentation in detail, but forgive me for not finding some content and clues about post hoc testing in 3dLMEr. So, I was frustrated with my performance
Really thanks for your help
Qianqian Wu

Gang · November 7, 2024, 4:04pm

You need to add a space before the colon (:) in each line with the -gltCode option. For example, this line:

-gltCode open 'Action: 1*open' \

should be coded as:

-gltCode open 'Action : 1*open' \

Gang Chen