AFNI version info (Precompiled binary linux_centos_7_64: Jun 30 2020 (Version AFNI_20.1.18 'Otho'):
Hi,
I'm trying to run 3dLME (3 x 3 design) where I have 3 groups and 3 timepoints. I want to run a glf test where I only run a group analysis at baseline. This is how I did it.
3dLME finishes without any problem, but when I go check the results for the glf test, I get a chisq instead of F. Just checking that those results are what they should be.
Thanks!
3dLME -prefix path/results_3dLME_SN_all_groups.nii -jobs 12 \
-mask path/SN_mask.nii \
-model 'group*session+age+sex+FD' \
-qVars 'age,FD' \
-ranEff '~1+FD' \
-SS_type 3 \
-num_glf 1 \
-glfLabel 1 'baseline' -glfCode 1 'session : 1*ses-01 group : 1*HC -1*Affective & 1*HC -1*NonAffective' \
-dataTable \
Subj group session age sex FD InputFile \
sub-control01 HC ses-01 28 2 0.1217738 /path/connmap_sub-control01_ses-01_SN.nii \
sub-control01 HC ses-02 28 2 0.1749546 /path/connmap_sub-control01_ses-02_SN.nii \
sub-control01 HC ses-03 28 2 0.150672 /path/connmap_sub-control01_ses-03_SN.nii \
sub-patient06 Affective ses-01 24 1 0.106127 /path/connmap_sub-patient06_ses-01_SN.nii \
sub-patient06 Affective ses-02 24 1 0.1434903 /path/connmap_sub-patient06_ses-02_SN.nii \
sub-patient06 Affective ses-03 24 1 0.149757 /path/connmap_sub-patient06_ses-03_SN.nii \
sub-patient01 NonAffective ses-01 25 1 0.1971614 /path/connmap_sub-patient01_ses-01_SN.nii \
sub-patient01 NonAffective ses-02 25 1 0.2590447 /path/connmap_sub-patient01_ses-02_SN.nii \
sub-patient01 NonAffective ses-03 25 1 0.254582 /path/connmap_sub-patient01_ses-03_SN.nii \