Hello,
I am running 3dISC on some subjects. I successfully ran this same script on the same set of subjects a couple weeks ago, and I generated the correct output back then. I am not sure why the script is getting an error now when I re-run it today.
This is the error:
Warning message:
In process.ISC.opts(lop, verb = lop$verb) : NAs introduced by coercion
Loading required package: lme4
Loading required package: Matrix
Loading required package: snow
Error in checkForRemoteErrors(val) :
32 nodes produced errors; first error: no terms component nor attribute
Calls: aperm ... clusterApply -> staticClusterApply -> checkForRemoteErrors
Execution halted
My 3dISC script input (and some of the data table) are here:
3dISC -prefix ${ISC_dir}/STAT.nii.gz -jobs 32 \
-mask ${mask} \
-r2z \
-model 'State+Age+State:Age+(1|Subj1)+(1|Subj2)' \
-qVars ‘Age’ \
-gltCode ave '1 0 -0.5 0 0 0' \
-gltCode G11vG22 '0 2 1 0 0 0' \
-gltCode G11 '1 1 0 0 0 0' \
-gltCode G22 '1 -1 -1 0 0 0' \
-gltCode G12 '1 0 1 0 0 0' \
-gltCode Age '0 0 0 1 0 -0.5' \
-gltCode Age11vAge22 '0 0 0 0 2 1' \
-gltCode Age11 '0 0 0 1 1 0' \
-gltCode Age22 '0 0 0 1 -1 -1' \
-gltCode Age12 '0 0 0 1 0 1' \
-dataTable \
Subj1 Subj2 State Age InputFile \
s1 s2 G11 -11 ${ISC_dir}/ISC.nii.gz'[0]' \
s1 s3 G11 -11 ${ISC_dir}/ISC.nii.gz'[1]' \
s1 s4 G11 -12 ${ISC_dir}/ISC.nii.gz'[2]' \
s1 s5 G11 -8 ${ISC_dir}/ISC.nii.gz'[3]' \
s1 s6 G11 9 ${ISC_dir}/ISC.nii.gz'[4]' \
s1 s7 G11 3 ${ISC_dir}/ISC.nii.gz'[5]' \
s1 s8 G12 5 ${ISC_dir}/ISC.nii.gz'[6]' \
s1 s9 G12 -4 ${ISC_dir}/ISC.nii.gz'[7]' \
s1 s10 G12 3 ${ISC_dir}/ISC.nii.gz'[8]' \
s1 s11 G12 1 ${ISC_dir}/ISC.nii.gz'[9]' \
…
The output file stops at this message:
[1] "Great, test run passed at voxel (32, 19, 1)!"
[1] "Start to compute 1 slices along Z axis. You can monitor the progress"
[1] "and estimate the total run time as shown below."
[1] "09/20/23 11:07:49.829"
Package snow loaded successfully!
Any advice would be greatly appreciated! Thank you so much for your help.
Sara