AFNI version info (afni -ver):
Precompiled binary 1: Jun 8 2023 (Version AFNI_99.99.99 'Alexios V Doukas the Bushy-eyebrowed')
(version is actually 23.1.07 being run on a Linux HPC (RedHat Enterprise Linux 9) via a module system)
I am attempting to run 3dDeconvolve, but keep getting errors to with my input image, saying that:
"AFNI can't deal with 5 dimensional NIfTI(/path/to/concatenated.nii.gz)"
"FATAL ERROR: Can't open dataset '/path/to/concatenated.nii.gz'"
However, the input I am providing is 4D, and was actually created with 3dTcat (the nifti header of concatenated.nii.gz corroborates this - these are the values of dim: 4 220 220 26 2880 1 1 1).
The same error occurs when I instead input each of the individual blocks that make up concatenated.nii.gz and use -noblock.
The concatenated file is too big to upload, so here's a link to one of the individual block files, in case that helps!
We run into this once in a while, but it is always on somewhat peculiar system that makes reproduction difficult, and it would be great if we could figure out where this is coming from. And thanks for the dataset. Naturally I see no such issue here, unfortunately.
Your afni -ver output does not seem to show the build system information. Is there more information in the output than what is shown?
If possible, would you please try running that 3dDeconvolve command after modifying the dataset? Please run:
nifti_tool -rm_ext ALL -infile concatenated.nii.gz -prefix concat.noext.nii.gz
and then run the 3dDeconvolve command with the concat.noext.nii.gz dataset?