3dDeconvolve script error

Hello,

I’m having trouble with the script (which is the following):


3dDeconvolve -force_TR 2 -input scaled_allruns+orig -mask retrieval_mask+orig -concat '1D: 0 60 120 180 240 300' \
-polort 1 \
-num_stimts 4 \
-stim_times 1 stimtimes_list.txt 'BLOCK(2,1)' \
-stim_times 2 stimtimes_write.txt 'BLOCK(2,1)' \
-stim_times 3 stimtimes_draw.txt 'BLOCK(2,1)' \
-stim_times 4 stimtimes_new.txt 'BLOCK(2,1)' \
-stim_label 1 write_tar \
-stim_label 2 list_tar \
-stim_label 3 draw_tar \
-stim_label 4 new_tar \
-gltsym 'SYM: draw_tar -write_tar' \
-gltsym 'SYM: draw_tar -list_tar' \
-gltsym 'SYM: draw_tar -new_tar' \
-gltsym 'SYM: list_tar -write_tar' \
-gltsym 'SYM: list_tar -new_tar' \
-gltsym 'SYM: write_tar -new_tar' \
-glt_label 1 draw_write \
-glt_label 2 draw_list \
-glt_label 3 draw_new \
-glt_label 4 list_write \
-glt_label 5 list_new \
-glt_label 6 write_new \
-fitts fitts_event \
-fout -tout -rout -bucket decon_sa_event \
-x1D X.xmat.1D -xjpeg X.jpg

This is the error I am getting:


** -stim_times NOTE ** guessing GLOBAL times if 1 time per line; LOCAL otherwise
++ ** GUESSED ** -stim_times 1 using LOCAL times
*+ WARNING: '-stim_times 1' (LOCAL) run#6 has 5 times outside range 0 .. -2 [PSFB syndrome]
 + dataset TR being used is 2 s -- unusable times follow
 6 16 26 47 81
++ ** GUESSED ** -stim_times 2 using LOCAL times
*+ WARNING: '-stim_times 2' (LOCAL) run#6 has 4 times outside range 0 .. -2 [PSFB syndrome]
 + dataset TR being used is 2 s -- unusable times follow
 33 37 53 72
++ ** GUESSED ** -stim_times 3 using LOCAL times
*+ WARNING: '-stim_times 3' (LOCAL) run#6 has 5 times outside range 0 .. -2 [PSFB syndrome]
 + dataset TR being used is 2 s -- unusable times follow
 19 42 63 90 103
++ ** GUESSED ** -stim_times 4 using LOCAL times
*+ WARNING: '-stim_times 4' (LOCAL) run#6 has 14 times outside range 0 .. -2 [PSFB syndrome]
 + dataset TR being used is 2 s -- unusable times follow

 11 40 61 67 69 74 85 87 92 98 100 109 114 118
------------------------------------------------------------
GLT matrix from 'SYM: draw_tar -write_tar':

   0   0   0   0   0   0   0   0   0   0   0   0  -1   0   1   0 
------------------------------------------------------------
GLT matrix from 'SYM: draw_tar -list_tar':

   0   0   0   0   0   0   0   0   0   0   0   0   0  -1   1   0 
------------------------------------------------------------
GLT matrix from 'SYM: draw_tar -new_tar':

   0   0   0   0   0   0   0   0   0   0   0   0   0   0   1  -1 
------------------------------------------------------------
GLT matrix from 'SYM: list_tar -write_tar':

   0   0   0   0   0   0   0   0   0   0   0   0  -1   1   0   0 
------------------------------------------------------------
GLT matrix from 'SYM: list_tar -new_tar':

   0   0   0   0   0   0   0   0   0   0   0   0   0   1   0  -1 
------------------------------------------------------------
GLT matrix from 'SYM: write_tar -new_tar':

   0   0   0   0   0   0   0   0   0   0   0   0   1   0   0  -1 


** FATAL ERROR: 3dDeconvolve dies: Invalid -concat input: 300 

** Program compile date = Sep 13 2019

One thing to note is that there is a row that has an asterisk (*) in the txt file, as there was an error when recording that block so I am excluding the stimtimes for that block.

Hi Nicole,

What is the output of:

3dinfo -n4 -tr scaled_allruns+orig

Does this mean the input does not have a valid TR?
What earlier steps are you running?

  • rick