Hi AFNI experts,
I want to use 3dLSS after using afni_proc.py. Is there a way to do this directly through afni_proc or how can I edit the 3dDeconvolve generated by afni_proc.py to be able to use 3dLSS afterwards? The following is generated by afni_proc.py. Thank you so much!
3dDeconvolve -input pb04.$subj.r*.scale+orig.HEAD
-censor censor_${subj}_combined_2.1D
-polort 3 -float
-local_times
-num_stimts 38
-stim_times_IM 1
stimuli/sub-01_task-turntest_animal-foil-DP-left-gold.txt ‘BLOCK(1,1)’
-stim_label 1 ani_fo_DP_lf_go
-stim_times_IM 2
stimuli/sub-01_task-turntest_animal-foil-DP-left-silver.txt ‘BLOCK(1,1)’
-stim_label 2 ani_fo_DP_lf_sl
-stim_times_IM 3
stimuli/sub-01_task-turntest_animal-foil-DP-right-gold.txt ‘BLOCK(1,1)’
-stim_label 3 ani_fo_DP_rg_go
-stim_times_IM 4
stimuli/sub-01_task-turntest_animal-foil-DP-right-silver.txt ‘BLOCK(1,1)’
-stim_label 4 ani_fo_DP_rg_sl
-stim_times_IM 5
stimuli/sub-01_task-turntest_animal-foil-NDP-left-gold.txt ‘BLOCK(1,1)’
-stim_label 5 ani_fo_NDP_lf_go
-stim_times_IM 6
stimuli/sub-01_task-turntest_animal-foil-NDP-left-silver.txt ‘BLOCK(1,1)’
-stim_label 6 ani_fo_NDP_lf_sl
-stim_times_IM 7
stimuli/sub-01_task-turntest_animal-foil-NDP-right-gold.txt ‘BLOCK(1,1)’
-stim_label 7 ani_fo_NDP_rg_go
-stim_times_IM 8
stimuli/sub-01_task-turntest_animal-foil-NDP-right-silver.txt
‘BLOCK(1,1)’
-stim_label 8 ani_fo_NDP_rg_sl
-stim_times_IM 9
stimuli/sub-01_task-turntest_animal-target-DP-left-gold.txt ‘BLOCK(1,1)’
-stim_label 9 ani_ta_DP_lf_go
-stim_times_IM 10
stimuli/sub-01_task-turntest_animal-target-DP-left-silver.txt
‘BLOCK(1,1)’
-stim_label 10 ani_ta_DP_lf_sl
-stim_times_IM 11
stimuli/sub-01_task-turntest_animal-target-DP-right-gold.txt ‘BLOCK(1,1)’
-stim_label 11 ani_ta_DP_rg_go
-stim_times_IM 12
stimuli/sub-01_task-turntest_animal-target-DP-right-silver.txt
‘BLOCK(1,1)’
-stim_label 12 ani_ta_DP_rg_sl
-stim_times_IM 13
stimuli/sub-01_task-turntest_animal-target-NDP-left-gold.txt ‘BLOCK(1,1)’
-stim_label 13 ani_ta_NDP_lf_go
-stim_times_IM 14
stimuli/sub-01_task-turntest_animal-target-NDP-left-silver.txt
‘BLOCK(1,1)’
-stim_label 14 ani_ta_NDP_lf_sl
-stim_times_IM 15
stimuli/sub-01_task-turntest_animal-target-NDP-right-gold.txt
‘BLOCK(1,1)’
-stim_label 15 ani_ta_NDP_rg_go
-stim_times_IM 16
stimuli/sub-01_task-turntest_animal-target-NDP-right-silver.txt
‘BLOCK(1,1)’
-stim_label 16 ani_ta_NDP_rg_sl
-stim_times_IM 17
stimuli/sub-01_task-turntest_vehicle-foil-DP-left-gold.txt ‘BLOCK(1,1)’
-stim_label 17 veh_fo_DP_lf_go
-stim_times_IM 18
stimuli/sub-01_task-turntest_vehicle-foil-DP-left-silver.txt ‘BLOCK(1,1)’
-stim_label 18 veh_fo_DP_lf_sl
-stim_times_IM 19
stimuli/sub-01_task-turntest_vehicle-foil-DP-right-gold.txt ‘BLOCK(1,1)’
-stim_label 19 veh_fo_DP_rg_go
-stim_times_IM 20
stimuli/sub-01_task-turntest_vehicle-foil-DP-right-silver.txt
‘BLOCK(1,1)’
-stim_label 20 veh_fo_DP_rg_sl
-stim_times_IM 21
stimuli/sub-01_task-turntest_vehicle-foil-NDP-left-gold.txt ‘BLOCK(1,1)’
-stim_label 21 veh_fo_NDP_lf_go
-stim_times_IM 22
stimuli/sub-01_task-turntest_vehicle-foil-NDP-left-silver.txt
‘BLOCK(1,1)’
-stim_label 22 veh_fo_NDP_lf_sl
-stim_times_IM 23
stimuli/sub-01_task-turntest_vehicle-foil-NDP-right-gold.txt ‘BLOCK(1,1)’
-stim_label 23 veh_fo_NDP_rg_go
-stim_times_IM 24
stimuli/sub-01_task-turntest_vehicle-foil-NDP-right-silver.txt
‘BLOCK(1,1)’
-stim_label 24 veh_fo_NDP_rg_sl
-stim_times_IM 25
stimuli/sub-01_task-turntest_vehicle-target-DP-left-gold.txt ‘BLOCK(1,1)’
-stim_label 25 veh_ta_DP_lf_go
-stim_times_IM 26
stimuli/sub-01_task-turntest_vehicle-target-DP-left-silver.txt
‘BLOCK(1,1)’
-stim_label 26 veh_ta_DP_lf_sl
-stim_times_IM 27
stimuli/sub-01_task-turntest_vehicle-target-DP-right-gold.txt
‘BLOCK(1,1)’
-stim_label 27 veh_ta_DP_rg_go
-stim_times_IM 28
stimuli/sub-01_task-turntest_vehicle-target-DP-right-silver.txt
‘BLOCK(1,1)’
-stim_label 28 veh_ta_DP_rg_sl
-stim_times_IM 29
stimuli/sub-01_task-turntest_vehicle-target-NDP-left-gold.txt
‘BLOCK(1,1)’
-stim_label 29 veh_ta_NDP_lf_go
-stim_times_IM 30
stimuli/sub-01_task-turntest_vehicle-target-NDP-left-silver.txt
‘BLOCK(1,1)’
-stim_label 30 veh_ta_NDP_lf_sl
-stim_times_IM 31
stimuli/sub-01_task-turntest_vehicle-target-NDP-right-gold.txt
‘BLOCK(1,1)’
-stim_label 31 veh_ta_NDP_rg_go
-stim_times_IM 32
stimuli/sub-01_task-turntest_vehicle-target-NDP-right-silver.txt
‘BLOCK(1,1)’
-stim_label 32 veh_ta_NDP_rg_sl
-stim_file 33 motion_demean.1D’[0]’ -stim_base 33 -stim_label 33 roll
-stim_file 34 motion_demean.1D’[1]’ -stim_base 34 -stim_label 34 pitch
-stim_file 35 motion_demean.1D’[2]’ -stim_base 35 -stim_label 35 yaw
-stim_file 36 motion_demean.1D’[3]’ -stim_base 36 -stim_label 36 dS
-stim_file 37 motion_demean.1D’[4]’ -stim_base 37 -stim_label 37 dL
-stim_file 38 motion_demean.1D’[5]’ -stim_base 38 -stim_label 38 dP
-fout
-tout
-x1D X.xmat.1D
-xjpeg X.jpg
-x1D_uncensored X.nocensor.xmat.1D
-fitts fitts.sub-01_task-turntest
-cbucket sub-01_task-turntest_beta
-bucket sub-01_task-turntest_stats
-fout -tout -x1D X.xmat.1D -xjpeg X.jpg
-x1D_uncensored X.nocensor.xmat.1D
-fitts fitts.$subj
-errts errts.${subj}
-cbucket all_betas.$subj
-bucket stats.$subj