using own brain mask in

Dear AFNI experts,

I am sure it is possible, but I can not find a solution: how can I use my own brain mask (preferably ‘.nii’, or ‘.nii.gz’) in so that the analysis runs only within the mask and I do not calculate the brain mask via AFNI. Is it somehow related to ‘-mask_import’?

Sorry for bothering you!

Best regards,

Wiktor Olszowy

Hi Wiktor,

I have “almost” done this many times over the past
few weeks, but it never quite happened. I will try to
get back to it next week. Sorry.

  • rick