Dear AFNI experts,
I am sure it is possible, but I can not find a solution: how can I use my own brain mask (preferably ‘.nii’, or ‘.nii.gz’) in afni_proc.py? so that the analysis runs only within the mask and I do not calculate the brain mask via AFNI. Is it somehow related to ‘-mask_import’?
Sorry for bothering you!
Best regards,
Wiktor Olszowy
Hi Wiktor,
I have “almost” done this many times over the past
few weeks, but it never quite happened. I will try to
get back to it next week. Sorry.
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