The -remove_inf_sli option in fat_proc_axialize

AFNI Message Board
1

Hi afni gurus (paul?),

It is said in the help page that the "-remove_inf_sli " option was only used for alignment but do not alter the final output.
I had played this option and found that the neck of the final output was cut.
Please kindly check whether the script is right.

my afni version is AFNI_18.0.25

best,
lz

2

Hi, LZ-

I think you are right that the wrong file is being output. I have PM’ed you an adjusted script that I think works better-- please try it and let me know.

Also, if you want to upload data, I am happy to take a look.

Thanks,
pt

3

HI Paul,
Thanks very much for your help!
I think it can solve my problem.
-lizhuang