Dear all
I just update my MaxcOX
and I can’t use uber.subject.py anymore
When I type uber_subject.py it will popped this
And I have tried many to install PyQt4…but it said I have already installed, I don’t know how to set it.
**** failed to import PyQt4.QtGui ****
PyQt4 must be installed to run the uber_subject.py GUI
→ see the output of: uber_subject.py -help_install
following is my afni_system_check
-------------------------------- general ---------------------------------
architecture: 64bit
system: Darwin
release: 19.0.0
version: Darwin Kernel Version 19.0.0: Thu Oct 17 16:17:15 PDT 2019; root:xnu-6153.41.3~29/RELEASE_X86_64
distribution: 10.15.1 x86_64
number of CPUs: 4
apparent login shell: tcsh
shell RC file: .cshrc (exists)
--------------------- AFNI and related program tests ---------------------
which afni : /Users/louis/abin/afni
afni version : Precompiled binary macosx_10.7_local: Aug 28 2018
: AFNI_18.2.15
AFNI_version.txt : AFNI_18.2.15, macosx_10.7_local, Aug 28 2018
which python : /usr/bin/python
python version : 2.7.16
which R : /usr/local/bin/R
R version : R version 3.5.3 (2019-03-11) – “Great Truth”
which tcsh : /bin/tcsh
instances of various programs found in PATH:
afni : 1 (/Users/louis/abin/afni)
R : 1 (/Library/Frameworks/R.framework/Versions/3.5/Resources/bin/R)
python : 1 (/System/Library/Frameworks/Python.framework/Versions/2.7/bin/python2.7)
python2 : 1 (/System/Library/Frameworks/Python.framework/Versions/2.7/bin/python2.7)
python3 : 2
/usr/local/Cellar/python/3.6.1/Frameworks/Python.framework/Versions/3.6/bin/python3.6
/usr/bin/python3
testing ability to start various programs…
afni : success
suma : success
3dSkullStrip : success
uber_subject.py : success
3dAllineate : success
3dRSFC : success
SurfMesh : success
3dClustSim : success
checking for R packages…
rPkgsInstall -pkgs ALL -check : FAILURE
oo Warning:
These packages are not installed on the computer: afex!
These packages are not installed on the computer: phia!
These packages are not installed on the computer: snow!
These packages are not installed on the computer: lme4!
These packages are not installed on the computer: paran!
These packages are not installed on the computer: psych!
These packages are not installed on the computer: brms!
checking for $HOME files…
.afnirc : found
.sumarc : found
.afni/help/all_progs.COMP : found
------------------------------ python libs -------------------------------
** python module not found: PyQt4
– PyQt4 is no longer needed for an AFNI bootcamp
-------------------------------- env vars --------------------------------
PATH = /usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/opt/X11/bin:/Library/Frameworks/Mono.framework/Versions/Current/Commands:/Users/louis/abin
PYTHONPATH = /usr/local/lib/python2.7/site-packages
R_LIBS =
LD_LIBRARY_PATH =
DYLD_LIBRARY_PATH (sub-shell) = /opt/X11/lib/flat_namespace:/opt/X11/lib/flat_namespace
DYLD_FALLBACK_LIBRARY_PATH (sub-shell) =
------------------------------ data checks -------------------------------
data dir : missing AFNI_data6
data dir : missing AFNI_demos
data dir : missing suma_demo
data dir : missing afni_handouts
atlas : found TT_N27+tlrc under /Users/louis/abin
------------------------------ OS specific -------------------------------
which brew : /usr/local/bin/brew
brew version : Homebrew 2.2.3
– for PyQt4 under brew, consider running:
brew install cartr/qt4/pyqt
++ found existent library /usr/local/lib/libgomp.1.dylib
++ found valid link /usr/local/lib/libglib-2.0.dylib
to …/Cellar/glib/2.52.0/lib/libglib-2.0.dylib
++ found 1 dylib files under ‘/opt/X11/lib/flat_namespace’
– found ‘libXt’ dylib files:
/opt/X11/lib/flat_namespace/libXt.6.dylib
– recent OS X, cheating to check DYLD_LIBRARY_PATH in cur shell ‘tcsh’…
++ found evar DYLD_LIBRARY_PATH = /opt/X11/lib/flat_namespace:/opt/X11/lib/flat_namespace
========================= summary, please fix: =========================
- missing R packages (see rPkgsInstall)
- insufficient data for AFNI bootcamp
following is my .cshrc file now, I am not sure the path I set is correct or not, hope someone can do me a favor!
set path = ( $path /Users/louis/abin )
if ( -f $HOME/.afni/help/all_progs.COMP ) then
source $HOME/.afni/help/all_progs.COMP
endif
set path = ( /usr/bin $path )
rehash
setenv PYTHONPATH = /usr/local/lib/python2.7/site-packages
uber_subject.py
setenv DYLD_LIBRARY_PATH /opt/X11/lib/flat_namespace
if ( $?DYLD_LIBRARY_PATH ) then
setenv DYLD_LIBRARY_PATH ${DYLD_LIBRARY_PATH}:/opt/X11/lib/flat_namespace
else
setenv DYLD_LIBRARY_PATH /opt/X11/lib/flat_namespace
endif
set filec
set autolist
set nobeep
alias ls ls -G
alias ll ls -lG
alias ltr ls -lGtr
And I think I have already installed R package, but it shows rPkgsInstall -pkgs ALL -check : FAILURE
and my env vars also meet problem.
Did anyone can help me to solve my problem? Thank you very much