skull-stripping using SSWarper


I have been using SSWarper for skull-stripping and spatial transformation. This method worked find on most of the cases (24 out of 27), but 3 data sets didn’t produce satisfactory results with skulls being not fully removed (see the attached). Since I have a small sample, I don’t want to exclude these 3 cases from data analysis. Can you make a suggestion for an alternative method? Thanks.


Hi, Sungjin-

Weird. What was your @SSwarper command?