Rerunning afni_proc.py and the proc.id script

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1

Hello,

I have an automated system that is running afni_proc.py and the proc.id script for each of my subjects. I am running into an issue where each subject already has the id.results directory generated by the proc.id script, but the processing has not been completed. I am unable to rerun the subjects be the proc.id script checks for this id.results directory and terminates if it exists. Is there a flag I can pass on with either the afni_proc.py or proc.id that will overwrite/replace that directory Either so I can run the script again from scratch or have it continue where it left off. Otherwise I’ll need to write a script that cleans up all the incomplete subjects.

Thanks,
Josh

2

Hi Josh,

The original intention was to be able to re-run or
continue the proc script, but it was never implemented,
as re-running a script is generally fast, and it keeps
the results clean. non-linear registration takes time,
but the registration results can be passed directly.

Anyway, it is necessary to clean up failed subjects.

  • rick