Dear AFNI experts,
I have an question regarding the alignment… (actually, I’m not fully sure that it is related to the alignment…)
Not all the subjects, but only one subject shows different brain shape after pre-processing.
(You could find the image in the attachment [(A): different one, (B) normal one].)
When I tried to check the step, it seems that it has an issue in ‘align’ part.
The problem is, even I tried to change the values or options,
(e.g. add option: -deoblique / change values in the options: -volreg off → -volreg on, 3dAutomask → 3dSkullStrip, and so on),
I could not get the correct one (I also tried to generate and input anatomical and epi data again).
Therefore, may I ask you how can I get the correct/general pre-processing result?
Thank you in advance.