question about extracting values from

Hello,

I have a question about how to extract values from a .niml file created using 3dSetupGroupInCorr.

For example, I did:

3dSetupGroupInCorr
-labels L5D1R3.ID.list.txt
-prefix L5D1R3.GROUP
-mask ALL_amask5050+tlrc.
errts.suj01d1r3_tlrc_rest.fanaticor+tlrc.
errts.suj02d1r3_tlrc_rest.fanaticor+tlrc.
errts.suj03d1r3_tlrc_rest.fanaticor+tlrc.
errts.suj04d1r3_tlrc_rest.fanaticor+tlrc.
errts.suj05d1r3_tlrc_rest.fanaticor+tlrc.
errts.suj06d1r3_tlrc_rest.fanaticor+tlrc.
errts.suj14d1r3_tlrc_rest.fanaticor+tlrc.
errts.suj15d1r3_tlrc_rest.fanaticor+tlrc.
errts.suj16d1r3_tlrc_rest.fanaticor+tlrc.
errts.suj19d1r3_tlrc_rest.fanaticor+tlrc.
errts.suj20d1r3_tlrc_rest.fanaticor+tlrc.
errts.suj21d1r3_tlrc_rest.fanaticor+tlrc.
errts.suj27d1r3_tlrc_rest.fanaticor+tlrc.
errts.suj28d1r3_tlrc_rest.fanaticor+tlrc.
errts.suj29d1r3_tlrc_rest.fanaticor+tlrc.

Then successfully ran a 3dGroupInCorr in AFNI.

Let’s say I have a mask %%%_Clust_mask_0001+tlrc.BRIK created from within AFNI’s Clusterize Rpt button and I would like to extract the values within my L5D1R3.GROUP.niml file that are inside this mask. Is there a command or set of commands that I could use to do this? I was under the assumption I could pass the mask and niml file to 3dmaskave but I am not having any luck with that.

Thanks,

Tim

There is no way to extract data from the .niml / .data pair created by 3dSetupGroupInCorr – you have to extract data from the original input datasets. If they are not available, you can re-create them with program 3dExtractGroupInCorr.

Good to know. And may thanks for another wonderful year of AFNI improvements!

Tim