Hi, Lauren-
That's great to know, thanks.
By default, it will put 5 the first 5 items from among the following, in descending order: full F-stat, main effects, contrasts modeled with 3dDeconvolve. So, if you had 3 stimulus classes and 3 contrasts, you would only see the Full F-stat (always present), the main effects of each stimulus class, and 1 contrasts.
If you wanted to show more (or less) in that section, you can add an option to AP to explicitly list which ones to see, via their labels:
-html_review_opts -vstat_list label1 [label2 label3 ...]
Note that the full F-stat need not be included there, it will always be shown.
Alternatively, if you have already run AP and don't want to re-run it, you could regenerate the APQC HTML with more vstats by running the following in the AP results directory:
apqc_make_tcsh.py \
-uvar_json out.ss_review_uvars.json \
-subj_dir . \
-vstat_list label1 [label2 label3 ...]
Re. the labels themselves, those are simply the same ones used in the AP command to define the stimulus classes and the GLT formula. From looking at the stats*HEAD file subbrick labels, you can also extract them as follows (from the apqc_make_tcsh.py help):
-vstat_list A B C ...
:(opt, only applicable if stim timing is used in
processing) provide a list of label items to specify
which volumes's images should appear in the vstat
QC block. Each item should correspond to subbrick
label basename (so not including '_GLT', "#N",
'Tstat', 'Fstat', 'Coef', etc.) in the stats_dset.
'Full_Fstat' is always added/included, even if not
provided in this list. If not used, the program
uses default logic to pick up to 5 items to show.
Just in case that is helpful.
--pt