So apparently it was not working well all the way through also when I was writing to the local folder... for some reason after running 'tedana' the analysis didn't continue to generating the QC folder.
The procpy command I am using is the following (note that it was originally written for a previous version of afni):
afni_proc.py \
-subj_id $subject.$experiment.$session.$scan \
-out_dir ${output_path}/$subject.$experiment.$session.$scan.results \
-script ${output_path}/proc.$subject.$experiment.$session.$scan \
-blocks despike tshift align tlrc volreg mask combine scale regress \
-radial_correlate_blocks tcat volreg \
-blip_forward_dset $subject.$experiment.$session.AP+orig.HEAD -align_unifize_epi local \
-blip_reverse_dset $subject.$experiment.$session.PA+orig.HEAD \
-copy_anat anatSS.$subject.$experiment.$session.nii \
-anat_has_skull no \
-dsets_me_run $subject.$experiment.$session.${scan}*0?+orig.HEAD \
-echo_times 13.2 34.72 56.24 \
-reg_echo 1 \
-tcat_remove_first_trs 4 \
-tshift_interp -wsinc9 \
-align_opts_aea -cost lpc+ZZ -check_flip \
-tlrc_base MNI152_2009_template_SSW.nii.gz \
-tlrc_NL_warp \
-tlrc_NL_warped_dsets anatQQ.$subject.$experiment.$session.nii anatQQ.$subject.$experiment.$session.aff12.1D anatQQ.$subject.$experiment.${session}_WARP.nii \
-volreg_align_to MIN_OUTLIER \
-volreg_align_e2a \
-volreg_tlrc_warp \
-mask_epi_anat yes \
-mask_apply anat \
-combine_method m_tedana \
-html_review_style pythonic \
-scr_overwrite
And this is the output of proc.py after the tedana is:
AFNI version : AFNI_23.2.09
AFNI package : macos_13_ARM_clang
TR : 2.01
TRs removed (per run) : 4
multiband level : 3
slice timing pattern : irregular
num stim classes provided : 0
final anatomy dset : anat_final.BR119.socCog.s2.faceloc+tlrc.HEAD
final stats dset : NO_STATS
final errts dset : errts.BR119.socCog.s2.faceloc.tproject+tlrc.HEAD
orig voxel counts : 128 128 72
orig voxel resolution : 1.601562 1.601562 1.600000
orig volume center : 8.141930 -23.789909 1.802401
final voxel resolution : 1.500000 1.500000 1.500000
motion limit : 0.3
num TRs above mot limit : 0
average motion (per TR) : 0.0295948
max motion displacement : 0.377231
average outlier frac (TR) : 0.0919145
flip guess : NO_FLIP
num runs found : 1
num TRs per run : 173
TRs total : 173
degrees of freedom used : 10
degrees of freedom left : 163
final DF fraction : 0.942197
rc: Subscript out of range.
Any advice on what might have gone wrong?
Thanks again!