Hi, I had recently updated my AFNI version and start having an issue with Clustsim.
So hope to ask your help to solve this issue.
When I run a simple command as below for one-sample t-test
3dttest++ -prefix …/Results/output.nii.gz -setA … -resid …/Results/resid.nii.gz -ACF -Clustsim
Everything goes smoothly until the end when 3dttest++ uses 3drefit to add Clustsim table into file header.
The error message showed as below.
++ 3drefit: AFNI version=AFNI_20.0.24 (Mar 31 2020) [64-bit]
++ Authored by: RW Cox
++ Processing AFNI dataset …/Results/output.nii.gz
++ applying attributes
+ loading and re-writing dataset …/Results/output.nii.gz (…/Results/…/Results/output.nii.gz in NIFTI storage)
** ERROR (nifti_image_read): failed to find header file for ‘…/Results/…/Results/output.nii.gz’
++ 3drefit processed 1 datasets
++ 3dttest++ ----- Cleaning up intermediate files:
+ 3dttest++ =============== -Clustsim work is finished ===============
++ ----- 3dttest++ says so long, farewell, and happy trails to you -----
It seems the dir path of prefix added prefix again while processing 3drefit, and looks like a bug.
I can use the data since I have all table, but because I’m currently developing a pipeline framework that organizing data with a certain structure for each step (based on BIDS), and this error breaks the pipeline. so I really hope that this issue could be resolved and look forward to your comment!